Releases: comorment/containers
Comorment-Containers-v1.9.0 (COSGAP)
This is a major update with a number of changes since 1.8.1 (see below).
Notably, the project is referred to as COSGAP (COntainerized Statistical Genetics Analysis Pipelines) as described in our paper, and container builds are now removed from the git history and are available from ghcr.io as described in the installation procedures.
What's Changed
- Revised autodocs build by @espenhgn in #231
- Updated LDpred2 examples by @deepchocolate in #233
- Deprecate Saige by @ttfiliz in #239
- Documentation updates by @espenhgn in #240
- references by @espenhgn in #242
- citation stuff by @espenhgn in #243
- add --extract and --exclude options to filter snps in gwas.py by @ttfiliz in #244
r.sif
: Rstudio-server docs by @espenhgn in #248gwas.sif
: build regenie withHAS_BOOST_IOSTREAM=1
by @espenhgn in #250- Build container image
hello:latest
using build action by @espenhgn in #252 - Revert "Build container image
hello:latest
using build action " by @espenhgn in #253 - Update run_ldpred2_slurm.job by @espenhgn in #254
- add support for additional options in gwas.py by @ttfiliz in #246
- Add container build/push actions by @espenhgn in #260
- Fixed wrong Docker build target by @espenhgn in #262
- search and replace
r
fix by @espenhgn in #264 - Update gSEM Git SHA by @juuf in #265
- bump wget version by @espenhgn in #266
- fix
GLIBCXX_3.4.30 not found
; conda env; fix broken tests by @espenhgn in #268 - buggered ldak download by @espenhgn in #272
python3
: add missing packages by @espenhgn in #274- Run unit tests during Docker build procedure by @espenhgn in #277
- Fix broken build-push action by @espenhgn in #279
- Missing tools/packages to Python3/R containers by @espenhgn in #281
- bump fossil version by @espenhgn in #282
- Containerize missing tools/update by @espenhgn in #289
- Build-push actions fail:
oras: not found
by @espenhgn in #291 - LDpred2: Add
--file-drop-snps
argument by @espenhgn in #293 - Containerize tools by @espenhgn in #295
- structure for
singularity
/containers
directory by @espenhgn in #296 - updated changelog for 1.9.0 by @espenhgn in #298
New Contributors
Full Changelog: v1.8.1...v1.9.0
Comorment-Containers-v1.8.1
This is 1st bugfix release of the CoMorMent-Containers project since v1.8.0 release.
Confer also the CHANGELOG for an overview of changes since the v1.8.0 release
What's Changed
- Minor changes to documentation + suggestion of TOC by @ofrei in #228
gwas.py
: fixed gwas demo run and IID column position by @ttfiliz in #234
Full Changelog: v1.8.0...v1.8.1
CoMorMent-Containers-v1.8.0
This is 1st feature release of the CoMorMent-Containers project since v1.7.1 release.
Confer also the CHANGELOG for an overview of changes since the v1.7.1 release
What's Changed
r.sif
: Add CC-GWAS R package by @espenhgn in #226calculateLD.R
: Fixed incorrect SNP map by @deepchocolate in #178
Full Changelog: v1.7.1...v1.8.0
CoMorMent-Containers-v1.7.1
Comorment-Containers-v1.7.1 Latest
This is 1st bugfix release of the CoMorMent-Containers project since v1.7.0 release.
Confer also the CHANGELOG for an overview of changes since the v1.7.0 release
What's Changed
Full Changelog: v1.7.0...v1.7.1
Comorment-Containers-v1.7.0
This is 1st feature release of the CoMorMent-Containers project since v1.6.0 release.
Confer also the CHANGELOG for an overview of changes since the v1.6.0 release
What's Changed
Full Changelog: v1.6.0...v1.7.0
Comorment-Containers-v1.6.0
This is 1st feature release of the CoMorMent-Containers project since v1.5.1 release.
Confer also the CHANGELOG for an overview of changes since the v1.5.1 release
What's Changed
Full Changelog: v1.5.1...v1.6.0
Comorment-Containers-v1.5.1
This is 1st bugfix release of the CoMorMent-Containers project since v1.5.0 release.
Confer also the CHANGELOG for an overview of changes since the v1.5.0 release
What's Changed
Full Changelog: v1.5.0...v1.5.1
CoMorMent-Containers-v1.5.0
This is 1st feature release of the CoMorMent-Containers project since v1.4.0 release.
Confer also the CHANGELOG for an overview of changes since the v1.4.0 release
What's Changed
Full Changelog: v1.4.0...v1.5.0
CoMorMent-Containers-v1.4.0
This is 10th minor/bugfix release of the CoMorMent-Containers project since v1.3.0 release
Confer also the CHANGELOG for an overview of changes since the v1.3.0 release
What's Changed
Full Changelog: v1.3.0...v1.4.0
CoMorMent-Containers-v1.3.9
This is 9th minor/bugfix release of the CoMorMent-Containers project since v1.3.0 release
Confer also the CHANGELOG for an overview of changes since the v1.3.0 release
What's Changed
Full Changelog: v1.3.0...v1.3.9