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ElderMedic wants to merge 48 commits intoprov_data_input_outputcommon-workflow-language/cwltool:prov_data_input_outputfrom maincommon-workflow-language/cwltool:mainCopy head branch name to clipboard

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Commits on Oct 4, 2024

• prepare for mypy 1.12

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• remove usage of ancient shellescape backport of Stdlib's shlex (#2041)

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• setuptools is not a install requirement

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• gh-actions: fail-fast false

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Commits on Oct 7, 2024

• Bump sphinx-rtd-theme from 2.0.0 to 3.0.0

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Commits on Oct 8, 2024

• Handle spurious ReceiveScatterOutput callbacks (#2051)

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• prepare for future mypy release and enable --local-partial-types now

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Commits on Oct 10, 2024

• Bump sphinx-rtd-theme from 3.0.0 to 3.0.1

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Commits on Oct 15, 2024

• Update black requirement from ~=24.8 to ~=24.10

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• Update lint-requirements.txt

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• Update lint-requirements.txt

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• Drop Python 3.8

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• add more docs

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• Bump mypy from 1.11.2 to 1.12.0

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Commits on Oct 17, 2024

• Update rdflib requirement from <7.1,>=4.2.2 to >=4.2.2,<7.2

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Commits on Oct 22, 2024

• Bump mypy from 1.12.0 to 1.12.1 (#2057)

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Commits on Oct 23, 2024

• Bump mypy from 1.12.1 to 1.13.0 (#2058)

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Commits on Oct 24, 2024

• build binary wheels

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• binary wheels: only build on main and other optimizations

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Commits on Nov 1, 2024

• Update flake8-bugbear requirement from <24.9 to <24.11

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Commits on Nov 2, 2024

• cpu_count can be None, so fallback to 1

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Commits on Nov 8, 2024

• add note on docker platform issue (#2064)

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Commits on Nov 11, 2024

• Update ruamel-yaml requirement from <0.18,>=0.16.0 to >=0.16.0,<0.19 (#2066)

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• use max_cores in taskQueue instead of system cores (#2038)

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Commits on Nov 12, 2024

• Use "run" with singularity/apptainer instead of "exec", when possible

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• conformances testing: no longer skip tests for singularity/apptainer

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Commits on Nov 15, 2024

• Bump codecov/codecov-action from 4 to 5

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Commits on Nov 27, 2024

• make-template: fix type error

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Commits on Dec 10, 2024

• --no-warnings includes schema-salad; --validate should complain to stdout

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Commits on Dec 11, 2024

• Append "_latest" to image id if no tag is present (#2085)

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Commits on Dec 12, 2024

• Fix cwltool:Loop extension definition (#2081)

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Commits on Dec 13, 2024

• Update flake8-bugbear requirement from <24.11 to <24.13 (#2086)

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• Bump cibuildwheel from 2.21.3 to 2.22.0 (#2077)

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• Bump sphinx-rtd-theme from 3.0.1 to 3.0.2 (#2069)

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• Bump pypa/cibuildwheel from 2.21.3 to 2.22.0 (#2076)

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Commits on Dec 14, 2024

• argpase: colorize the --help output with rich-argparse

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Commits on Dec 16, 2024

• Proposal: Improved ProvenanceProfile definition (#2082)

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Commits on Dec 17, 2024

• singularity: improve testing on version 4.x+

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Commits on Dec 20, 2024

• README: Python supported versions list was outdated

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• docs: render the CLI groups too

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Commits on Dec 24, 2024

• Bump mypy from 1.13.0 to 1.14.0

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Commits on Jan 1, 2025

• Bump mypy from 1.14.0 to 1.14.1

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Commits on Jan 10, 2025

• Change caching pathmapper to respect the pathmapper factory

  

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Commits on Jan 22, 2025

• Various cleanups to make the docs better.

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• typo

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Commits on Jan 29, 2025

• Update black requirement from ==24.* to ==25.*

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• black 2025 reformat

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Commits on Jan 30, 2025

• Add missing cwl-runner refs

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