-
-
Notifications
You must be signed in to change notification settings - Fork 4
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
using schema-salad common-workflow-language/schema_salad#829 and https://github.com/common-workflow-language/cwl-v1.2/blob/24e2f8c6c86508ccc7c432cd69ce6a773481e64f/CommonWorkflowLanguage.yml
- Loading branch information
Showing
115 changed files
with
1,521 additions
and
359 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
|
|
||
| export enum Array_name { | ||
| ARRAY='array', | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,146 @@ | ||
|
|
||
| import { | ||
| Dictionary, | ||
| expandUrl, | ||
| loadField, | ||
| LoaderInstances, | ||
| LoadingOptions, | ||
| Saveable, | ||
| ValidationException, | ||
| prefixUrl, | ||
| save, | ||
| saveRelativeUri | ||
| } from './util/Internal' | ||
| import { v4 as uuidv4 } from 'uuid' | ||
| import * as Internal from './util/Internal' | ||
|
|
||
|
|
||
| /** | ||
| * Auto-generated class implementation for https://w3id.org/cwl/cwl#CWLArraySchema | ||
| */ | ||
| export class CWLArraySchema extends Saveable implements Internal.CWLArraySchemaProperties { | ||
| extensionFields?: Internal.Dictionary<any> | ||
|
|
||
| /** | ||
| * Defines the type of the array elements. | ||
| */ | ||
| items: Internal.PrimitiveType | Internal.CWLRecordSchema | Internal.EnumSchema | Internal.CWLArraySchema | string | Array<Internal.PrimitiveType | Internal.CWLRecordSchema | Internal.EnumSchema | Internal.CWLArraySchema | string> | ||
|
|
||
| /** | ||
| * Must be `array` | ||
| */ | ||
| type: Internal.Array_name | ||
|
|
||
|
|
||
| constructor ({loadingOptions, extensionFields, items, type} : {loadingOptions?: LoadingOptions} & Internal.CWLArraySchemaProperties) { | ||
| super(loadingOptions) | ||
| this.extensionFields = extensionFields ?? {} | ||
| this.items = items | ||
| this.type = type | ||
| } | ||
|
|
||
| /** | ||
| * Used to construct instances of {@link CWLArraySchema }. | ||
| * | ||
| * @param __doc Document fragment to load this record object from. | ||
| * @param baseuri Base URI to generate child document IDs against. | ||
| * @param loadingOptions Context for loading URIs and populating objects. | ||
| * @param docRoot ID at this position in the document (if available) | ||
| * @returns An instance of {@link CWLArraySchema } | ||
| * @throws {@link ValidationException} If the document fragment is not a | ||
| * {@link Dictionary} or validation of fields fails. | ||
| */ | ||
| static override async fromDoc (__doc: any, baseuri: string, loadingOptions: LoadingOptions, | ||
| docRoot?: string): Promise<Saveable> { | ||
| const _doc = Object.assign({}, __doc) | ||
| const __errors: ValidationException[] = [] | ||
|
|
||
| let items | ||
| try { | ||
| items = await loadField(_doc.items, LoaderInstances.uriunionOfPrimitiveTypeLoaderOrCWLRecordSchemaLoaderOrEnumSchemaLoaderOrCWLArraySchemaLoaderOrstrtypeOrarrayOfunionOfPrimitiveTypeLoaderOrCWLRecordSchemaLoaderOrEnumSchemaLoaderOrCWLArraySchemaLoaderOrstrtypeFalseTrue2None, | ||
| baseuri, loadingOptions) | ||
| } catch (e) { | ||
| if (e instanceof ValidationException) { | ||
| __errors.push( | ||
| new ValidationException('the `items` field is not valid because: ', [e]) | ||
| ) | ||
| } else { | ||
| throw e | ||
| } | ||
| } | ||
|
|
||
| let type | ||
| try { | ||
| type = await loadField(_doc.type, LoaderInstances.typedslArray_nameLoader2, | ||
| baseuri, loadingOptions) | ||
| } catch (e) { | ||
| if (e instanceof ValidationException) { | ||
| __errors.push( | ||
| new ValidationException('the `type` field is not valid because: ', [e]) | ||
| ) | ||
| } else { | ||
| throw e | ||
| } | ||
| } | ||
|
|
||
| const extensionFields: Dictionary<any> = {} | ||
| for (const [key, value] of Object.entries(_doc)) { | ||
| if (!CWLArraySchema.attr.has(key)) { | ||
| if ((key as string).includes(':')) { | ||
| const ex = expandUrl(key, '', loadingOptions, false, false) | ||
| extensionFields[ex] = value | ||
| } else { | ||
| __errors.push( | ||
| new ValidationException(`invalid field ${key as string}, \ | ||
| expected one of: \`items\`,\`type\``) | ||
| ) | ||
| break | ||
| } | ||
| } | ||
| } | ||
|
|
||
| if (__errors.length > 0) { | ||
| throw new ValidationException("Trying 'CWLArraySchema'", __errors) | ||
| } | ||
|
|
||
| const schema = new CWLArraySchema({ | ||
| extensionFields: extensionFields, | ||
| loadingOptions: loadingOptions, | ||
| items: items, | ||
| type: type | ||
| }) | ||
| return schema | ||
| } | ||
|
|
||
| save (top: boolean = false, baseUrl: string = '', relativeUris: boolean = true) | ||
| : Dictionary<any> { | ||
| const r: Dictionary<any> = {} | ||
| for (const ef in this.extensionFields) { | ||
| r[prefixUrl(ef, this.loadingOptions.vocab)] = this.extensionFields.ef | ||
| } | ||
|
|
||
| if (this.items != null) { | ||
| const u = saveRelativeUri(this.items, baseUrl, false, | ||
| relativeUris, 2) | ||
| if (u != null) { | ||
| r.items = u | ||
| } | ||
| } | ||
|
|
||
| if (this.type != null) { | ||
| r.type = save(this.type, false, baseUrl, relativeUris) | ||
| } | ||
|
|
||
| if (top) { | ||
| if (this.loadingOptions.namespaces != null) { | ||
| r.$namespaces = this.loadingOptions.namespaces | ||
| } | ||
| if (this.loadingOptions.schemas != null) { | ||
| r.$schemas = this.loadingOptions.schemas | ||
| } | ||
| } | ||
| return r | ||
| } | ||
|
|
||
| static attr: Set<string> = new Set(['items','type']) | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
|
|
||
| import * as Internal from './util/Internal' | ||
|
|
||
|
|
||
| /** | ||
| * Auto-generated interface for https://w3id.org/cwl/cwl#CWLArraySchema | ||
| */ | ||
| export interface CWLArraySchemaProperties extends Internal.ArraySchemaProperties { | ||
|
|
||
| extensionFields?: Internal.Dictionary<any> | ||
|
|
||
| /** | ||
| * Defines the type of the array elements. | ||
| */ | ||
| items: Internal.PrimitiveType | Internal.CWLRecordSchema | Internal.EnumSchema | Internal.CWLArraySchema | string | Array<Internal.PrimitiveType | Internal.CWLRecordSchema | Internal.EnumSchema | Internal.CWLArraySchema | string> | ||
|
|
||
| /** | ||
| * Must be `array` | ||
| */ | ||
| type: Internal.Array_name | ||
| } |
Oops, something went wrong.