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gt bioss notebooks
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Clémence Réda committed May 16, 2024
1 parent 68e93b6 commit e057bb5
Showing 1 changed file with 0 additions and 3 deletions.
3 changes: 0 additions & 3 deletions src/NORDic/UTILS/STRING_utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -78,9 +78,6 @@ def get_protein_names_from_STRING(gene_list, taxon_id, app_name=None, version="1
if ("Error" in res_df.columns):
print("<STRING_utils> Error from STRING: %s" % str(res_df["ErrorMessage"]))
return None
print(gene_list[:5])
print(len(gene_list))
print(res_df.columns)
return res_df[["queryItem", "stringId", "preferredName", "annotation"]]

def get_image_from_STRING(my_genes, taxon_id, file_name="network.png", min_score=0, network_flavor="evidence", network_type="functional", app_name=None, version="11.5", quiet=False):
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