R version and package versions not up to date

[judith-bourque]

Issue

When I opened the Rproject for branch #25, I got the following error message:

# Bootstrapping renv 0.15.4 --------------------------------------------------
* Downloading renv 0.15.4 ... OK
* Installing renv 0.15.4 ... Done!
* Successfully installed and loaded renv 0.15.4.
* Project '~/Dropbox/github/clessn/hublotr' loaded. [renv 0.15.4]
Warning message:
This project is configured to use R version '3.6.3', but '4.2.2' is currently being used. 
* The project library is out of sync with the lockfile.
* Use `renv::restore()` to install packages recorded in the lockfile.

With further inspection, here's what I learned

> renv::status()
The following package(s) are installed but not recorded in the lockfile:
             _
  tidyjson     [0.3.2]
  bit64        [4.0.5]
  progress     [1.2.2]
  tidyselect   [1.2.0]
  bit          [4.0.5]
  readr        [2.1.3]
  generics     [0.1.3]
  vroom        [1.6.1]
  dplyr        [1.0.10]
  hms          [1.1.2]
  tzdb         [0.3.0]
  tidyr        [1.2.1]
  assertthat   [0.2.1]

Use `renv::snapshot()` to add these packages to your lockfile.

The following package(s) are out of sync:

     Package   Lockfile Version   Library Version
        Rcpp              1.0.9            1.0.10
        brew              1.0-7             1.0-8
       bslib              0.4.0             0.4.2
       callr              3.7.1             3.7.3
         cli              3.3.0             3.6.0
  commonmark              1.8.0             1.8.1
       cpp11              0.4.2             0.4.3
      crayon              1.5.1             1.5.2
        curl              4.3.2             5.0.0
        desc              1.4.1             1.4.2
    devtools              2.4.4             2.4.5
      digest             0.6.29            0.6.31
    evaluate               0.15              0.20
       fansi              1.0.3             1.0.4
 fontawesome              0.3.0             0.4.0
        gert              1.6.0             1.9.2
          gh              1.3.0             1.3.1
    gitcreds              0.1.1             0.1.2
       highr                0.9              0.10
   htmltools              0.5.3             0.5.4
 htmlwidgets              1.5.4             1.6.1
      httpuv              1.6.5             1.6.8
        httr              1.4.2             1.4.4
    jsonlite              1.8.0             1.8.4
       knitr               1.39              1.41
   lifecycle              1.0.1             1.0.3
     openssl              2.0.0             2.0.5
      pillar              1.8.0             1.8.1
    pkgbuild              1.3.1             1.4.0
     pkgdown              2.0.6             2.0.7
     pkgload              1.3.0             1.3.2
    processx              3.7.0             3.8.0
          ps              1.7.1             1.7.2
       purrr              0.3.4             1.0.1
        ragg              1.2.2             1.2.5
       rlang              1.0.4             1.0.6
   rmarkdown               2.14              2.20
    roxygen2              7.2.1             7.2.3
  rstudioapi               0.13              0.14
   rversions              2.1.1             2.1.2
        sass              0.4.2             0.4.4
       shiny              1.7.2             1.7.4
     stringi              1.7.8            1.7.12
     stringr              1.4.0             1.5.0
         sys                3.4             3.4.1
    testthat              3.1.4             3.1.6
     tinytex               0.40              0.43
       vctrs              0.4.1             0.5.1
     whisker                0.4             0.4.1
        xfun               0.31              0.36
        yaml              2.3.5             2.3.6
         zip              2.2.0             2.2.2

Use `renv::snapshot()` to save the state of your library to the lockfile.
Use `renv::restore()` to restore your library from the lockfile.

Proposed solution

• Use renv::snapshot() to add the packages to your lockfile.

[judith-bourque]

Proposed solution

Replace renv with package version dependencies in DESCRIPTION.

Example: https://github.com/tidyverse/dplyr/blob/1068096d5cf8ce2d442d91fc376e20e97ea32a61/DESCRIPTION#L22-L37