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clemgoub/TE-Aid
Issue when running TE-Aid in parallel

Hi, I need to run TE-Aid in parallel but it causes errors because of using shared resources. I tried this command (to copy TE-Aid to a temp file for each process so it doesn t use the same database) in ...
  • manighanipoor
  • 2
  • Opened 
    on Apr 11, 2024
  • #15

clemgoub/TE-Aid
Adding a bioconda recipe

Hello, I recently tried your tool, found it useful, and thought it d be good to release it on bioconda! If you re interested, I got put in a PR to bioconda to add a recipe for this tool. One thing that ...
  • bricoletc
  • 19
  • Opened 
    on Dec 6, 2023
  • #8

clemgoub/TE-Aid
Better to move "file1" and "file2" into $OUTPUT

Hi Clément, I found it would be better to move these two temporary files including file1 and file2 to $OUTPUT. Especially when TE Aid is executed under multiple threads environment. #join orfs with their ...
  • qjiangzhao
  • 2
  • Opened 
    on Oct 9, 2023
  • #6

clemgoub/TE-Aid
I got probelm when I run TE Aid in multiple threads

Hi, Many thanks for the wonderful tool. I integrated TE Aid into my software. My tool enables multiple threads, but I got a problem when I run TE Aid in multiple threads. I found TE Aid will create ...
enhancement
  • qjiangzhao
  • 4
  • Opened 
    on Aug 23, 2023
  • #5

clemgoub/TE-Aid
No Output generated

Dear Clement, I seem to encounter many errors that lead to a no-output result. This is the error message: query: ref genome: TE - genome blastn e-value: 10e-8 full length min ratio: 0.9 hits transparency: ...
  • roperete
  • 3
  • Opened 
    on Jun 14, 2022
  • #4

clemgoub/TE-Aid
Missing component to detect ORFs?

Hello, I am running TE-Aid with the default options, but it doesn t seem to find any ORF in any of my consensus sequences. On the exit I see these messages (indented by me). Do they mean that I am missing ...
  • piosierra
  • 3
  • Opened 
    on Jun 1, 2022
  • #3

clemgoub/TE-Aid
Clarification regarding ORFs and protein hits plot

Hello, Thanks for developing this useful tool. I am playing around with it and I came out with a plot with some arrowheads and crosses. My guess is that the arrowheads are just small arrows that aren t ...
  • acontrerasg
  • 1
  • Opened 
    on Apr 13, 2022
  • #2

clemgoub/TE-Aid
Error: Invalid graph value 'png'

Hi Clément, First of all, congratulation for this great tool :smile: Anyway, I have tried to run it with the -D flag, but it generates the following error: Draw a threshold dotplot of two sequences ...
  • TommasoBarberis
  • 1
  • Opened 
    on Apr 13, 2022
  • #1
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