A genomic atlas of systemic interindividual epigenetic variation in humans

Published in Genome Biology

A review in Nature Reviews|Genetics

R,Python and shell Scripts used for this publication can be found in this repository !

In an effort to make my results reproducible and aid others in their own data analysis, I've included all of the code used in the paper. I hope this will be useful and feel free to conact me with suggestions/comments/questions.

-- Chathura Gunasekara (gunaseka AT bcm.edu)

If you want to work with the raw FASTQ files, you can download them from dbGAP

reproducible prototypes in ipython notebooks:

Notebook 0: Filenames
Notebook 1: Bisulfit pipeline
Notebook 2: CoRSIV Detection Algorithm
Notebook 3: CoRSIV Plotter R Scripts