Research Assistant, Bioinformatics group at ICT
Institute of Computing Technology
Chinese Academy of Sciences
6, Kexueyuan South Road, Zhongguancun, Beijing, 100190, China
Email: chungongyu at gmail dot com
Genome Assembly, MSMS, Bioinfomatics, Information Retrieval, Recommendation System
- SIGA: An open-source Sensitive and Intelligent de novo Genome Assembler
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Lin, Y., Qiao, Y., Sun, S., Yu, C, Dong G., and Bu, D. "A fragmentation event model for peptide identification by mass spectrometry", Proc. 12th Int'l Conf. on Research in Comput. Molecular Biol. RECOMB'08, in Lecture Notes in Computer Science 4955, 154-166, Springer Verlag (2008).
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Sun, S., Yu, C., Qiao, Y., Lin, Y., Dong, G., Liu, C., Zhang, J., Zhang, Z., Cai, J., Zhang, H., and Bu, D., "Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra", J. Proteome Res., 7(01): 202-208 (2008).
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Yu, C., Lin, Y., Sun, S., Cai, J., Zhang, J., Bu, D., Zhang, Z., and Chen, R., "An iterative algorithm to quantify factors influencing peptide fragmentation during tandem mass spectrometry", J Bioinform Comput Biol., 5(2a):297-311 (2007) (special issue on CSB'06).
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Yu, C., Lin, Y., Sun, S., Cai, J., Zhang, J., Bu, D., Zhang, Z., and Chen, R., "An iterative algorithm to quantify the factors influencing peptide fragmentation for MS/MS spectrum", Proc. 2006 LSS Computational Systems Bioinformatics Conference CSB'06, 353-360, Imperial College Press (2006).