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environment.yaml
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name: synthEHRella
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bzip2=1.0.8=hd590300_5
- ca-certificates=2024.6.2=hbcca054_0
- ld_impl_linux-64=2.40=hf3520f5_2
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h77fa898_7
- libgomp=13.2.0=h77fa898_7
- libnsl=2.0.1=hd590300_0
- libsqlite=3.45.3=h2797004_0
- libuuid=2.38.1=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libzlib=1.3.1=h4ab18f5_1
- ncurses=6.5=h59595ed_0
- openssl=3.3.1=h4ab18f5_0
- pip=24.0=pyhd8ed1ab_0
- python=3.10.14=hd12c33a_0_cpython
- readline=8.2=h8228510_1
- setuptools=70.0.0=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- wheel=0.43.0=pyhd8ed1ab_1
- xz=5.2.6=h166bdaf_0
- pip:
- accelerate==0.31.0
- antlr4-python3-runtime==4.8
- asttokens==2.4.1
- certifi==2024.6.2
- chardet==5.2.0
- comm==0.2.2
- contourpy==1.2.1
- cycler==0.12.1
- debugpy==1.8.1
- decorator==5.1.1
- dill==0.3.8
- einops==0.7.0
- exceptiongroup==1.2.1
- executing==2.0.1
- filelock==3.13.1
- fonttools==4.53.0
- fsspec==2024.2.0
- huggingface-hub==0.23.3
- icd-mappings==0.4.0
- idna==3.7
- importlib-resources==5.13.0
- ipykernel==6.29.4
- ipython==8.25.0
- jedi==0.19.1
- jinja2==3.1.3
- joblib==1.4.2
- jupyter-client==8.6.2
- jupyter-core==5.7.2
- kiwisolver==1.4.5
- lightgbm==4.5.0
- markupsafe==2.1.5
- matplotlib==3.9.0
- matplotlib-inline==0.1.7
- mpmath==1.3.0
- nest-asyncio==1.6.0
- networkx==3.2.1
- ninja==1.11.1.1
- numpy==1.26.3
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.20.5
- nvidia-nvjitlink-cu12==12.1.105
- nvidia-nvtx-cu12==12.1.105
- omegaconf==2.1.1
- opt-einsum==3.3.0
- packaging==24.0
- pandas==2.2.2
- parso==0.8.4
- patsy==0.5.6
- pexpect==4.9.0
- phemap==0.2.dev0
- pillow==10.2.0
- platformdirs==4.2.2
- prompt-toolkit==3.0.46
- psutil==5.9.8
- ptyprocess==0.7.0
- pure-eval==0.2.2
- py4j==0.10.9.7
- pygments==2.18.0
- pyparsing==3.1.2
- pyspark==3.5.1
- python-dateutil==2.9.0.post0
- pytz==2024.1
- pyyaml==6.0.1
- pyzmq==26.0.3
- rdkit==2023.9.6
- regex==2024.5.15
- requests==2.32.3
- safetensors==0.4.3
- scikit-learn==1.5.0
- scipy==1.13.1
- seaborn==0.13.2
- six==1.16.0
- spark-nlp==5.3.3
- stack-data==0.6.3
- statsmodels==0.14.2
- sympy==1.12
- threadpoolctl==3.5.0
- tokenizers==0.12.1
- torch==2.3.1+cu121
- torchaudio==2.3.1+cu121
- torchvision==0.18.1+cu121
- tornado==6.4.1
- tqdm==4.62.2
- traitlets==5.14.3
- transformers==4.19.0
- triton==2.3.1
- typing-extensions==4.9.0
- tzdata==2024.1
- wcwidth==0.2.13
- wget==3.2
- xgboost==2.1.1