DESCRIPTION

Package: NMF
Type: Package
Title: Algorithms and framework for Nonnegative Matrix Factorization (NMF)
Version: 0.22
Date: 2014-12-04
Author: Renaud Gaujoux, Cathal Seoighe
Maintainer: Renaud Gaujoux <renaud@tx.technion.ac.il>
Description: This package provides a framework to perform Non-negative Matrix
    Factorization (NMF). It implements a set of already published algorithms
    and seeding methods, and provides a framework to test, develop and plug
    new/custom algorithms. Most of the built-in algorithms have been optimized
    in C++, and the main interface function provides an easy way of performing
    parallel computations on multicore machines.
License: GPL (>=2)
URL: http://renozao.github.io/NMF
BugReports: http://github.com/renozao/NMF/issues
SCM: github+gran:renozao, r-forge
LazyLoad: yes
VignetteBuilder: knitr
Depends:
    R (>= 3.1.0),
    methods,
    utils,
    pkgmaker (>= 0.25.7),
    registry,
    rngtools (>= 1.2.3),
    cluster
Imports:
    graphics,
    stats,
    stringr,
    digest,
    grid,
    grDevices,
    gridBase,
    colorspace,
    RColorBrewer,
    foreach,
    doParallel (>= 1.0.8),
    ggplot2,
    reshape2,
    dendextend
Suggests:
    RcppOctave (>= 0.11),
    fastICA,
    doMPI,
    bigmemory (>= 4.2),
    synchronicity,
    corpcor,
    xtable,
    devtools,
    knitr,
    bibtex,
    RUnit,
    mail,
    Biobase
Collate:
    'rmatrix.R'
    'nmf-package.R'
    'utils.R'
    'versions.R'
    'algorithmic.R'
    'options.R'
    'grid.R'
    'colorcode.R'
    'atracks.R'
    'aheatmap.R'
    'NMF-class.R'
    'transforms.R'
    'Bioc-layer.R'
    'NMFstd-class.R'
    'NMFOffset-class.R'
    'registry.R'
    'heatmaps.R'
    'NMFns-class.R'
    'nmfModel.R'
    'fixed-terms.R'
    'NMFfit-class.R'
    'NMFSet-class.R'
    'NMFStrategy-class.R'
    'NMFSeed-class.R'
    'NMFStrategyFunction-class.R'
    'NMFStrategyIterative-class.R'
    'NMFStrategyOctave-class.R'
    'NMFplots.R'
    'registry-algorithms.R'
    'algorithms-base.R'
    'algorithms-brunet.R'
    'algorithms-lnmf.R'
    'algorithms-lsnmf.R'
    'algorithms-pe-nmf.R'
    'algorithms-siNMF.R'
    'algorithms-snmf.R'
    'data.R'
    'extractFeatures.R'
    'registry-seed.R'
    'parallel.R'
    'nmf.R'
    'rnmf.R'
    'run.R'
    'seed-base.R'
    'seed-ica.R'
    'seed-nndsvd.R'
    'setNMFClass.R'
    'simulation.R'
    'tests.R'