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R_Version
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## This the Version which was used to carried out the BT PCM.
> sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats4 grid stats graphics grDevices utils datasets methods
[10] base
other attached packages:
[1] C50_0.1.0-21 Rcpi_1.2.0 AnnotationDbi_1.28.1
[4] GenomeInfoDb_1.2.4 IRanges_2.0.1 S4Vectors_0.4.0
[7] Biobase_2.26.0 BiocGenerics_0.12.1 RSQLite_1.0.0
[10] DBI_0.3.1 gridExtra_0.9.1 prospectr_0.1.3
[13] RcppArmadillo_0.4.600.4.0 caret_6.0-41 ggplot2_1.0.0
[16] lattice_0.20-29 corrplot_0.73 unbalanced_1.1
[19] RANN_2.4.1 FNN_1.1
loaded via a namespace (and not attached):
[1] Biostrings_2.34.1 bitops_1.0-6 BradleyTerry2_1.0-6 brglm_0.5-9
[5] car_2.0-24 ChemmineR_2.18.0 codetools_0.2-10 colorspace_1.2-4
[9] digest_0.6.8 doParallel_1.0.8 fingerprint_3.5.2 fmcsR_1.8.0
[13] foreach_1.4.2 GO.db_3.0.0 GOSemSim_1.24.1 gtable_0.1.2
[17] gtools_3.4.1 iterators_1.0.7 lme4_1.1-7 MASS_7.3-37
[21] Matrix_1.1-5 mgcv_1.8-4 minqa_1.2.4 munsell_0.4.2
[25] nlme_3.1-119 nloptr_1.0.4 nnet_7.3-8 pbkrtest_0.4-2
[29] plyr_1.8.1 png_0.1-7 proto_0.3-10 quantreg_5.11
[33] rcdk_3.3.2 rcdklibs_1.5.8.4 Rcpp_0.11.4 RCurl_1.95-4.5
[37] reshape2_1.4.1 rJava_0.9-6 rjson_0.2.15 scales_0.2.4
[41] SparseM_1.6 splines_3.1.2 stringr_0.6.2 tools_3.1.2
[45] XVector_0.6.0 zlibbioc_1.12.0
>
This is info for the current environment.
> search()
[1] ".GlobalEnv" "package:C50" "package:Rcpi"
[4] "package:AnnotationDbi" "package:GenomeInfoDb" "package:IRanges"
[7] "package:S4Vectors" "package:Biobase" "package:BiocGenerics"
[10] "package:parallel" "package:stats4" "package:RSQLite"
[13] "package:DBI" "package:gridExtra" "package:grid"
[16] "package:prospectr" "package:RcppArmadillo" "package:caret"
[19] "package:ggplot2" "package:lattice" "package:corrplot"
[22] "package:unbalanced" "package:RANN" "package:FNN"
[25] "tools:rstudio" "package:stats" "package:graphics"
[28] "package:grDevices" "package:utils" "package:datasets"
[31] "package:methods" "Autoloads" "package:base"