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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags -->
<meta name="description" content="ngl viewer">
<meta name="author" content="Alexander S Rose">
<title>NGL Viewer Projects</title>
<!-- Bootstrap core CSS -->
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<style>
/*!
* Start Bootstrap - Scrolling Nav (http://startbootstrap.com/)
* Copyright 2013-2016 Start Bootstrap
* Licensed under MIT (https://github.com/BlackrockDigital/startbootstrap/blob/gh-pages/LICENSE)
*/
body {
width: 100%;
height: 100%;
}
html {
width: 100%;
height: 100%;
}
@media(min-width:767px) {
.navbar {
padding: 20px 0;
}
.top-nav-collapse {
padding: 0;
}
}
.section {
padding-top: 150px;
height: 100%;
text-align: center;
background: #eee;
}
</style>
</head>
<body id="page-top" data-spy="scroll" data-target=".navbar-fixed-top">
<!-- Navigation -->
<nav class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-ex1-collapse">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="#page-top">NGL Viewer</a>
</div>
<!-- Collect the nav links, forms, and other content for toggling -->
<div class="collapse navbar-collapse navbar-ex1-collapse">
<ul class="nav navbar-nav">
<!-- Hidden li included to remove active class from about link when scrolled up past about section -->
<li class="hidden"><a href="#page-top"></a></li>
<li><a href="#ngl">NGL</a></li>
<li><a href="#nglview">NGLview</a></li>
<li><a href="#mdsrv">MDsrv</a></li>
<li><a href="#contact"><small>Contact</small></a></li>
<li><a href="#cite"><small>Cite</small></a></li>
<li><a href="#funding"><small>Funding</small></a></li>
</ul>
</div>
<!-- /.navbar-collapse -->
</div>
<!-- /.container -->
</nav>
<section id="intro" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>NGL Viewer</h1>
<p>NGL Viewer is a collection of tools for web-based molecular graphics. WebGL is employed to display molecules like proteins and DNA/RNA with a variety of representations.</p>
</div>
</div>
</div>
</section>
<section id="ngl" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>NGL</h1>
<p>NGL is a viewer and a library for molecular visualization.</p>
<ul class="breadcrumb">
<li><a href="https://github.com/arose/ngl">Github</a></li>
<li><a href="http://nglviewer.org/ngl/api/">Docs</a></li>
<li><a href="http://nglviewer.org/ngl/">Web application</a></li>
<li><a href="http://nglviewer.org/ngl/gallery/">Gallery</a></li>
</ul>
</div>
</div>
</div>
</section>
<section id="nglview" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>NGLview</h1>
<p>Jupyter/IPython widget to interactively view molecular structures and trajectories in notebooks.</p>
<ul class="breadcrumb">
<li><a href="https://github.com/arose/nglview">Github</a></li>
<li><a href="http://nglviewer.org/nglview/latest/">Docs</a></li>
</ul>
</div>
</div>
</div>
</section>
<section id="mdsrv" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>MDsrv</h1>
<p>MDsrv is a web-based tool developed to enhance collaborative research by providing non-experts with easy and quick online access to molecular dynamics (MD) simulations.</p>
<ul class="breadcrumb">
<li><a href="https://github.com/arose/mdsrv">Github</a></li>
<li><a href="http://nglviewer.org/mdsrv/">Docs</a></li>
</ul>
</div>
</div>
</div>
</section>
<section id="contact" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>Contact</h1>
<p>Please send correspondence to <a href="mailto:alexander.rose@weirdbyte.de">Alexander Rose</a></p>
</div>
</div>
</div>
</section>
<section id="cite" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>Cite</h1>
<p>
<ul>
<li>AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose. NGL viewer: web-based molecular graphics for large complexes. Bioinformatics: bty419, 2018. <a href="http://dx.doi.org/10.1093/bioinformatics/bty419">doi:10.1093/bioinformatics/bty419</a></li>
<li>AS Rose and PW Hildebrand. NGL Viewer: a web application for molecular visualization. Nucl Acids Res (1 July 2015) 43 (W1): W576-W579 first published online April 29, 2015. <a href="http://dx.doi.org/10.1093/nar/gkv402">doi:10.1093/nar/gkv402</a></li>
<li>H Nguyen, DA Case and AS Rose. (2017). NGLview - Interactive molecular graphics for Jupyter notebooks. Bioinformatics, btx789. <a href="http://dx.doi.org/10.1093/bioinformatics/btx789">doi:10.1093/bioinformatics/btx789</a></li>
<li>JKS Tiemann, R Guixà-González, PW Hildebrand and AS Rose. (2017) .Viewing and sharing molecular dynamics simulations on the web. Nature Methods 14, 1123–1124 (2017). <a href="http://dx.doi.org/10.1038/nmeth.4497">doi:10.1038/nmeth.4497</a></li>
</ul>
</p>
</div>
</div>
</div>
</section>
<section id="funding" class="section">
<div class="container">
<div class="row">
<div class="col-lg-6 col-lg-offset-3">
<h1>Funding</h1>
<p>
<ul>
<li><a href="https://www.rcsb.org/">RCSB PDB</a> funding by a grant [DBI-1338415; PI: SK Burley] from the NSF, the NIH, and the US DoE.</li>
<li>NCI/NIH award number U01 CA198942</li>
<li>DFG Projekt HI 1502</li>
</ul>
</p>
</div>
</div>
</div>
</section>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.12.4/jquery.min.js"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
</body>
</html>