ZNK tweaks

config.yaml

@@ -6,44 +6,64 @@
 # swc: Software Carpentry
 # dc: Data Carpentry
 # lc: Library Carpentry
-# cp: Carpentries (to use for instructor traning for instance)
-carpentry: dc
+# cp: Carpentries (to use for instructor training for instance)
+# incubator: The Carpentries Incubator
+carpentry: 'dc'
 
 # Overall title for pages.
-title: 'R-ecology-lesson'
+title: 'Data Analysis and Visualization in R for Ecologists'
+
+# Date the lesson was created (YYYY-MM-DD, this is empty by default)
+created: ~
+
+# Comma-separated list of keywords for the lesson
+keywords: 
 
 # Life cycle stage of the lesson
 # possible values: pre-alpha, alpha, beta, stable
-life_cycle: beta
+life_cycle: 'beta'
 
 # License of the lesson
-license: CC-BY 4.0
+license: 'CC-BY 4.0'
 
 # Link to the source repository for this lesson
-source: https://github.com/carpentries-incubator/R-ecology-lesson
+source: 'https://github.com/carpentries-incubator/R-ecology-lesson'
 
 # Default branch of your lesson
-branch: main
+branch: 'main'
 
 # Who to contact if there are any issues
-contact: team@carpentries.org
+contact: 'team@carpentries.org'
 
 # Navigation ------------------------------------------------
-# The menu bar will be in the following order:
-# 
-# - Code of Conduct      (CODE_OF_CONDUCT.md)
-# - Setup                (setup.md)
-# - Episodes             (episodes/)
-# - Learner Resources    (learners/)
-# - Instructor Resources (instructors/)
-# - Learner Profiles     (profiles/)
-# - License              (LICENSE.md)
-# 
+#
 # Use the following menu items to specify the order of
-# individual pages in each dropdown section
+# individual pages in each dropdown section. Leave blank to
+# include all pages in the folder.
+#
+# Example -------------
+#
+# episodes:
+# - introduction.md
+# - first-steps.md
+#
+# learners:
+# - setup.md
+#
+# instructors:
+# - instructor-notes.md
+#
+# profiles:
+# - one-learner.md
+# - another-learner.md
 
-# Order of episodes in your lesson 
+# Order of episodes in your lesson
 episodes: 
+- introduction-r-rstudio.Rmd
+- visualizing-ggplot.Rmd
+- how-r-thinks-about-data.Rmd
+- working-with-data.Rmd
+- extra-challenges.Rmd
 
 # Information for Learners
 learners: 
@@ -54,3 +74,9 @@ instructors:
 # Learner Profiles
 profiles: 
 
+# Customisation ---------------------------------------------
+#
+# This space below is where custom yaml items (e.g. pinning
+# sandpaper and varnish versions) should live
+
+

episodes/05-extra-challenges.Rmd → episodes/extra-challenges.Rmd

@@ -5,7 +5,7 @@ exercises: 3
 ---
 
 
-```{r setup, include=F}
+```{r setup, include=FALSE}
 knitr::opts_chunk$set(dpi = 200, out.height = 600, out.width = 600, R.options = list(max.print = 100))
 ```
 
@@ -20,7 +20,7 @@ surveys <- read_csv("data/cleaned/surveys_complete_77_89.csv")
 
 There are some issues with these `ggplot2` examples. Can you figure out what is wrong with each one?
 
-```{r, eval=F}
+```{r, eval=FALSE}
 ggplot(data = surveys, 
        mapping = aes(x = weight, y = hindfoot_length, color = "blue")) +
   geom_point()
@@ -33,7 +33,7 @@ Our points don't actually turn out blue, because we defined the color inside of
 
 ::::::::::::::::::::::::
 
-```{r, eval=F}
+```{r, eval=FALSE}
 ggplot(data = surveys, 
        mapping = aes(x = "weight", y = "hindfoot_length")) +
   geom_point()
@@ -45,7 +45,7 @@ Variable names inside `aes()` should not be wrapped in quotes.
 
 ::::::::::::::::::::::::
 
-```{r, eval=F}
+```{r, eval=FALSE}
 ggplot(data = surveys, 
        mapping = aes(x = weight, y = hindfoot_length)) 
   + geom_point()
@@ -57,7 +57,7 @@ When adding things like `geom_` or `scale_` functions to a `ggplot()`, you have
 
 ::::::::::::::::::::::::
 
-```{r, eval=F}
+```{r, eval=FALSE}
 ggplot(data = surveys, x = weight, y = hindfoot_length) +
   geom_point()
 ```
@@ -68,7 +68,7 @@ When translating variables from the data, like `weight` and `hindfoot_length`, t
 
 ::::::::::::::::::::::::
 
-```{r, eval=F}
+```{r, eval=FALSE}
 ggplot(data = surveys, 
        mapping = aes(x = weight, y = hindfoot_length, color = species_id)) +
   geom_point() +

episodes/02-how-r-thinks-about-data.Rmd → episodes/how-r-thinks-about-data.Rmd

@@ -23,7 +23,7 @@ exercises: 3
 
 ## Setup
 
-```{r setup, include=F}
+```{r setup, include=FALSE}
 knitr::opts_chunk$set(dpi = 200, out.height = 600, out.width = 600, R.options = list(max.print = 100))
 ```
 
@@ -299,7 +299,7 @@ rep(1:10, each = 4)
 
 1. Write some code to generate the following vector:
 
-```{r seq-chalenge, echo=F}
+```{r seq-chalenge, echo=FALSE}
 rep(-3:3, 3)
 ```
 
@@ -419,7 +419,7 @@ We've already created quite a few objects in R using the `<-` assignment arrow,
 
 What is the value of `y` after running the following code?
 
-```{r assignment-challenge, eval=F}
+```{r assignment-challenge, eval=FALSE}
 x <- 5
 y <- x
 x <- 10