Update 55 packages

[carpentries-bot]

🤖 This is an automated build

This will update the following package versions in your lesson:

# CRAN ===============================
- DBI             [repo: RSPM -> CRAN; ver: 1.1.2 -> 1.1.3]
- MASS            [7.3-55 -> 7.3-58.1]
- Matrix          [1.4-0 -> 1.4-1]
- RColorBrewer    [1.1-2 -> 1.1-3]
- Rcpp            [1.0.8.2 -> 1.0.9]
- blob            [1.2.2 -> 1.2.3]
- broom           [0.7.12 -> 1.0.1]
- bslib           [repo: RSPM -> CRAN; ver: 0.3.1 -> 0.4.0]
- callr           [repo: RSPM -> CRAN; ver: 3.7.0 -> 3.7.2]
- cli             [3.2.0 -> 3.3.0]
- crayon          [1.5.0 -> 1.5.1]
- dbplyr          [repo: RSPM -> CRAN; ver: 2.1.1 -> 2.2.1]
- dplyr           [1.0.8 -> 1.0.10]
- dtplyr          [repo: RSPM -> CRAN; ver: 1.2.1 -> 1.2.2]
- evaluate        [repo: RSPM -> CRAN; ver: 0.15 -> 0.16]
- fansi           [1.0.2 -> 1.0.3]
- farver          [repo: RSPM -> CRAN; ver: 2.1.0 -> 2.1.1]
- forcats         [repo: RSPM -> CRAN; ver: 0.5.1 -> 0.5.2]
- generics        [repo: RSPM -> CRAN; ver: 0.1.2 -> 0.1.3]
- ggplot2         [3.3.5 -> 3.3.6]
- googlesheets4   [repo: RSPM -> CRAN; ver: 1.0.0 -> 1.0.1]
- gtable          [repo: RSPM -> CRAN; ver: 0.3.0 -> 0.3.1]
- haven           [2.4.3 -> 2.5.1]
- hms             [repo: RSPM -> CRAN; ver: 1.1.1 -> 1.1.2]
- htmltools       [repo: RSPM -> CRAN; ver: 0.5.2 -> 0.5.3]
- httr            [1.4.2 -> 1.4.4]
- knitr           [1.37 -> 1.40]
- magrittr        [2.0.2 -> 2.0.3]
- mgcv            [1.8-39 -> 1.8-40]
- modelr          [repo: RSPM -> CRAN; ver: 0.1.8 -> 0.1.9]
- nlme            [3.1-155 -> 3.1-159]
- openssl         [repo: * -> CRAN; ver: 2.0.0 -> 2.0.2; ref: v2.0.0 -> *; sha: c77bb322 -> *]
- pillar          [repo: RSPM -> CRAN; ver: 1.7.0 -> 1.8.1]
- processx        [3.5.2 -> 3.7.0]
- ps              [1.6.0 -> 1.7.1]
- readxl          [1.3.1 -> 1.4.1]
- renv            [0.15.4 -> 0.15.5]
- reprex          [repo: RSPM -> CRAN; ver: 2.0.1 -> 2.0.2]
- rlang           [repo: RSPM -> CRAN; ver: 1.0.2 -> 1.0.5]
- rmarkdown       [2.13 -> 2.16]
- rstudioapi      [repo: RSPM -> CRAN; ver: 0.13 -> 0.14]
- rvest           [repo: RSPM -> CRAN; ver: 1.0.2 -> 1.0.3]
- sass            [0.4.0 -> 0.4.2]
- scales          [1.1.1 -> 1.2.1]
- stringr         [repo: RSPM -> CRAN; ver: 1.4.0 -> 1.4.1]
- tibble          [3.1.6 -> 3.1.8]
- tidyverse       [repo: RSPM -> CRAN; ver: 1.3.1 -> 1.3.2]
- tinytex         [0.37 -> 0.41]
- tzdb            [0.2.0 -> 0.3.0]
- uuid            [1.0-3 -> 1.1-0]
- vctrs           [0.3.8 -> 0.4.1]
- viridisLite     [repo: RSPM -> CRAN; ver: 0.4.0 -> 0.4.1]
- xfun            [0.30 -> 0.32]

# GitHub =============================
- ratdat          [weecology/ratdat@main: a28f894b -> d7599f3a]

# carpentries ========================
- stringi         [repo: RSPM -> carpentries; ver: 1.7.6 -> 1.7.8]

⏱️ In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update-55-packages-2022-09-06
git checkout update-55-packages-2022-09-06

• Auto-generated by create-pull-request via

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/carpentries-incubator/R-ecology-lesson/compare/md-outputs..md-outputs-PR-12

The following changes were observed in the rendered markdown documents:

 03-working-with-data.md                            | 502 +++++++++++----------
 ...isualizing-ggplot-rendered-boxplot-jitter-1.png | Bin 405931 -> 407839 bytes
 ...ualizing-ggplot-rendered-boxplot-outliers-1.png | Bin 401769 -> 402809 bytes
 ...lot-rendered-customizing-challenge-answer-1.png | Bin 780758 -> 775506 bytes
 ...visualizing-ggplot-rendered-element-blank-1.png | Bin 651936 -> 652478 bytes
 ...01-visualizing-ggplot-rendered-facet-wrap-1.png | Bin 557349 -> 556850 bytes
 fig/01-visualizing-ggplot-rendered-fill-na-1.png   | Bin 631272 -> 631560 bytes
 ...01-visualizing-ggplot-rendered-geom-color-1.png | Bin 652993 -> 656078 bytes
 ...-visualizing-ggplot-rendered-global-color-1.png | Bin 650166 -> 647880 bytes
 fig/01-visualizing-ggplot-rendered-labels-1.png    | Bin 802905 -> 796479 bytes
 ...visualizing-ggplot-rendered-legend-remove-1.png | Bin 806143 -> 812546 bytes
 ...isualizing-ggplot-rendered-reverse-layers-1.png | Bin 499402 -> 499780 bytes
 fig/01-visualizing-ggplot-rendered-text-size-1.png | Bin 656263 -> 654219 bytes
 fig/01-visualizing-ggplot-rendered-theme-bw-1.png  | Bin 655319 -> 654426 bytes
 ...sualizing-ggplot-rendered-unnamed-chunk-1-1.png | Bin 632379 -> 628935 bytes
 ...g-ggplot-rendered-violin-challenge-answer-1.png | Bin 568950 -> 565087 bytes
 ...ggplot-rendered-violin-challenge-answer-2-1.png | Bin 572108 -> 568075 bytes
 ...-data-rendered-date-plot-challenge-answer-1.png | Bin 454002 -> 454979 bytes
 md5sum.txt                                         |  30 +-
 19 files changed, 271 insertions(+), 261 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2022-09-06 01:57:35 +0000