Here I will carry out the computational challenge for site 1.
/home/arturo.carlosenriquez/condor/comp_challenge
To test the effect of using larger files, now a file containing all reads from patients 1,2 and 3 will be created. This file will be submitted as a single job, but queued several times. Then, we will test the effects of more and less worker nodes.
The corresponding files will be called:
bwa_batch_1500.job align2.py