fix order in yaml dump

cantinilab · Nov 2, 2023 · fd838ea · fd838ea
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commit fd838ea
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/hummuspy/pyproject.toml b/hummuspy/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "hummuspy"
-version = "0.0.43"
+version = "0.0.45"
 description = "HuMMuS is a novel method for the inference of regulatory mechanisms from multi-omics data with any type and number of omics, through a heterogeneous multilayer network framework."
 authors = ["Rémi Trimbour <remi.trimbour@pasteur.fr>"]
 license = "GPL-3.0-only"

diff --git a/hummuspy/src/hummuspy/__pycache__/__init__.cpython-310.pyc b/hummuspy/src/hummuspy/__pycache__/__init__.cpython-310.pyc
diff --git a/hummuspy/src/hummuspy/__pycache__/explore_network.cpython-310.pyc b/hummuspy/src/hummuspy/__pycache__/explore_network.cpython-310.pyc
diff --git a/hummuspy/src/hummuspy/explore_network.py b/hummuspy/src/hummuspy/explore_network.py
@@ -190,7 +190,7 @@ def compute_RandomWalk(
         config['seed'] = seeds_folder+'/'+seeds_filename+'.txt'
     with open(multilayer_f+'/{}/'.format(config_folder)
               + seeds_filename + '_' + config_name, 'w') as f:
-        yaml.dump(config, f)
+        yaml.dump(config, f, sort_keys=False)
 
     # multixrank
     multixrank_obj = mxr.Multixrank(
@@ -199,7 +199,7 @@ def compute_RandomWalk(
         wdir=multilayer_f)
     ranking_df = multixrank_obj.random_walk_rank()
 
-    # and filter df results andadd seeds name
+    # and filter df results and add seeds name
     ranking_df['seed'] = seeds_filename
     ranking_df = ranking_df[ranking_df.score > 0]  # ??
     ranking_df.columns = ['layer', 'target', 'path_layer', 'score', 'seed']