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Is there a way to correlate KEGG pathways to taxa? #128

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Liviacmg opened this issue Nov 28, 2024 · 1 comment
Open

Is there a way to correlate KEGG pathways to taxa? #128

Liviacmg opened this issue Nov 28, 2024 · 1 comment
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@Liviacmg
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Hi, I managed successfully to generate the pathway error bar plot, but now I would like to know if the output itself allows to know which taxa are correlated with these pathways (converted from KO to KEGG)?

@Liviacmg Liviacmg added the bug Something isn't working label Nov 28, 2024
@Liviacmg
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Update: I runned picrust again with the --per_sequence_contrib --stratified options and got the pred_metagenome_contrib.tsv that has taxa, samples and KOs. But still, is there a way to input this data into this script to correlate the taxa with the KOs converted to KEGGs?

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