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62 Open 50 Closed
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Issues list

Question_Are_there_ways_to_combine_predicted_pathways_with_the_bacterial_genera_for_visualization? bug Something isn't working
#131 opened Dec 8, 2024 by ShevchenkoAlla
4
Error in value[[3L]](cond) : DESeq2 analysis failed: every gene contains at least one zero, cannot compute log geometric means bug Something isn't working
#130 opened Dec 5, 2024 by Liviacmg
2
Creating pathway error bar plots... Error in $<-.data.frame(*tmp*, "group", value = c(2L, 1L, 2L, 2L, : replacement has 179 rows, data has 1 In addition: Warning message: In cbind(sample = colnames(sub_relative_abundance_mat), group = Group, : number of rows of result is not a multiple of vector length (arg 2) bug Something isn't working
#129 opened Nov 28, 2024 by Liviacmg
3
Is there a way to correlate KEGG pathways to taxa? bug Something isn't working
#128 opened Nov 28, 2024 by Liviacmg
1
Using the test dataset: Error in x[, ii] : subscript out of bounds. bug Something isn't working
#127 opened Nov 28, 2024 by Lacona
2
ko2kegg_abundance leads to 0 keggs
#126 opened Nov 26, 2024 by ranfoxall
3
Option to Display a Representative Sample Instead of All Replicates in the Plot
#125 opened Nov 23, 2024 by Niyuh04
Input file problem question Further information is requested
#124 opened Nov 18, 2024 by ShevchenkoAlla
7
Choosing of selective metacyc pathway"ggpicrust2" bug Something isn't working
#123 opened Nov 7, 2024 by kesava31
1
All my pathway results are NA bug Something isn't working
#122 opened Nov 1, 2024 by weiGu-88
2
daa_method ="Maaslin2", is there more options adjusting models and other parameters other than the default setting?
#121 opened Oct 7, 2024 by shuqili
1
Question: how to gain annotation from KEGG IDs? bug Something isn't working
#120 opened Oct 5, 2024 by AMosca96
1
pathway_heatmap can't extract columns past the end bug Something isn't working
#118 opened Sep 18, 2024 by luigallucci
7
pathway_errorbar error bug Something isn't working
#117 opened Sep 3, 2024 by DeniRibicic
7
# Perform pathway DAA using ALDEx2 method not working with example dataset bug Something isn't working
#116 opened Aug 21, 2024 by JayalalKJ
1
pathway_annotation error "An error occurred. Retrying......" bug Something isn't working
#115 opened Aug 20, 2024 by jw0531jung
4
Error in switch(file_format, .txt = abundance <- readr::read_delim(file, : EXPR must be a length 1 vector**
#112 opened Aug 8, 2024 by bplet01
2
Error pathway_errorbar "$<-.data.frame(*tmp*, "group", value = c(2L, 2L, 2L, 2L, : replacement has 20 rows, data has 1" bug Something isn't working
#111 opened Jun 26, 2024 by raqxavier
4
Is this package compatible with other ggplot functions? bug Something isn't working
#110 opened Jun 19, 2024 by chung-wingko
1
pathway_errorbar no longer working to graph data bug Something isn't working
#109 opened Jun 11, 2024 by AbbiHern
1
pathway_pca
#108 opened Jun 3, 2024 by raqxavier
4
Help needed using sample dada Math.factor ‘round’ not meaningful for factors bug Something isn't working
#107 opened Jun 3, 2024 by jrhaulung
2
All my pathway results are NA bug Something isn't working
#106 opened Apr 18, 2024 by Elixir0822
1
The 'method' column in the 'daa_results_df' data frame contains more than one method. bug Something isn't working
#105 opened Apr 2, 2024 by freemutation
5
curl_fetch_memory bug Something isn't working
#104 opened Mar 19, 2024 by mccannpeter
4
ProTip! Updated in the last three days: updated:>2024-12-27.