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pr-commands.yaml
258 workflow runs
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Error pathway_errorbar "$<-.data.frame(*tmp*, "group", value = c(2L, 2L, 2L, 2L, : replacement has 20 rows, data has 1" Commands #624: Issue comment #111 (comment) created by cafferychen777
December 25, 2024 17:59 3s
December 25, 2024 17:59 3s
ko2kegg_abundance leads to 0 keggs Commands #623: Issue comment #126 (comment) created by cafferychen777
December 25, 2024 17:48 3s
December 25, 2024 17:48 3s
Creating pathway error bar plots... Error in $<-.data.frame(*tmp*, "group", value = c(2L, 1L, 2L, 2L, : replacement has 179 rows, data has 1 In addition: Warning message: In cbind(sample = colnames(sub_relative_abundance_mat), group = Group, : number of rows of result is not a multiple of vector length (arg 2) Commands #622: Issue comment #129 (comment) created by cafferychen777
December 25, 2024 17:46 3s
December 25, 2024 17:46 3s
Error in value[[3L]](cond) : DESeq2 analysis failed: every gene contains at least one zero, cannot compute log geometric means Commands #621: Issue comment #130 (comment) created by cafferychen777
December 25, 2024 17:44 2s
December 25, 2024 17:44 2s
pathway_errorbar nonspecific error Commands #620: Issue comment #74 (comment) created by cafferychen777
December 25, 2024 17:37 2s
December 25, 2024 17:37 2s
Question_Are_there_ways_to_combine_predicted_pathways_with_the_bacterial_genera_for_visualization? Commands #619: Issue comment #131 (comment) created by cafferychen777
December 25, 2024 17:35 3s
December 25, 2024 17:35 3s
Question_Are_there_ways_to_combine_predicted_pathways_with_the_bacterial_genera_for_visualization? Commands #618: Issue comment #131 (comment) created by DanaBlu
December 17, 2024 11:06 3s
December 17, 2024 11:06 3s
pathway_errorbar nonspecific error Commands #617: Issue comment #74 (comment) created by isa-wilson
December 14, 2024 03:50 3s
December 14, 2024 03:50 3s
Question_Are_there_ways_to_combine_predicted_pathways_with_the_bacterial_genera_for_visualization? Commands #616: Issue comment #131 (comment) created by ShevchenkoAlla
December 9, 2024 15:53 3s
December 9, 2024 15:53 3s
Error in value[[3L]](cond) : DESeq2 analysis failed: every gene contains at least one zero, cannot compute log geometric means Commands #615: Issue comment #130 (comment) created by cafferychen777
December 9, 2024 04:03 2s
December 9, 2024 04:03 2s
Commands Commands #614: created by cafferychen777
December 9, 2024 04:03 3s
December 9, 2024 04:03 3s
Question_Are_there_ways_to_combine_predicted_pathways_with_the_bacterial_genera_for_visualization? Commands #613: Issue comment #131 (comment) created by cafferychen777
December 9, 2024 04:02 3s
December 9, 2024 04:02 3s
Creating pathway error bar plots... Error in $<-.data.frame(*tmp*, "group", value = c(2L, 1L, 2L, 2L, : replacement has 179 rows, data has 1 In addition: Warning message: In cbind(sample = colnames(sub_relative_abundance_mat), group = Group, : number of rows of result is not a multiple of vector length (arg 2) Commands #612: Issue comment #129 (comment) created by Liviacmg
December 5, 2024 22:32 2s
December 5, 2024 22:32 2s
Creating pathway error bar plots... Error in $<-.data.frame(*tmp*, "group", value = c(2L, 1L, 2L, 2L, : replacement has 179 rows, data has 1 In addition: Warning message: In cbind(sample = colnames(sub_relative_abundance_mat), group = Group, : number of rows of result is not a multiple of vector length (arg 2) Commands #611: Issue comment #129 (comment) created by jveix
December 4, 2024 03:35 2s
December 4, 2024 03:35 2s
ko2kegg_abundance leads to 0 keggs Commands #610: Issue comment #126 (comment) created by ranfoxall
December 2, 2024 20:39 3s
December 2, 2024 20:39 3s
Using the test dataset: Error in x[, ii] : subscript out of bounds. Commands #609: Issue comment #127 (comment) created by Lacona
December 2, 2024 01:40 3s
December 2, 2024 01:40 3s
Error pathway_errorbar "$<-.data.frame(*tmp*, "group", value = c(2L, 2L, 2L, 2L, : replacement has 20 rows, data has 1" Commands #608: Issue comment #111 (comment) created by Liviacmg
November 28, 2024 22:00 2s
November 28, 2024 22:00 2s
Is there a way to correlate KEGG pathways to taxa? Commands #607: Issue comment #128 (comment) created by Liviacmg
November 28, 2024 20:34 2s
November 28, 2024 20:34 2s
Using the test dataset: Error in x[, ii] : subscript out of bounds. Commands #606: Issue comment #127 (comment) created by cafferychen777
November 28, 2024 02:22 3s
November 28, 2024 02:22 3s
ko2kegg_abundance leads to 0 keggs Commands #605: Issue comment #126 (comment) created by cafferychen777
November 28, 2024 00:48 2s
November 28, 2024 00:48 2s
Input file problem Commands #604: Issue comment #124 (comment) created by ShevchenkoAlla
November 21, 2024 14:31 4s
November 21, 2024 14:31 4s
Input file problem Commands #603: Issue comment #124 (comment) created by cafferychen777
November 19, 2024 20:58 3s
November 19, 2024 20:58 3s
Input file problem Commands #602: Issue comment #124 (comment) created by cafferychen777
November 19, 2024 20:57 3s
November 19, 2024 20:57 3s
Input file problem Commands #601: Issue comment #124 (comment) created by ShevchenkoAlla
November 19, 2024 14:04 3s
November 19, 2024 14:04 3s
Input file problem Commands #600: Issue comment #124 (comment) created by cafferychen777
November 18, 2024 21:12 3s
November 18, 2024 21:12 3s