fixup: all freq

broadinstitute · Apr 8, 2024 · 54c5455 · 54c5455
1 parent f305a50
commit 54c5455
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/data-pipeline/src/data_pipeline/datasets/gnomad_sv_v3.py b/data-pipeline/src/data_pipeline/datasets/gnomad_sv_v3.py
@@ -232,7 +232,7 @@ def import_svs_from_vcfs(vcf_path):
             ),
         ).drop("n_homalt")
     )
-
+    ds = ds.annotate(freq=hl.struct(all=ds.freq))
     # Re-key
     ds = ds.key_by("variant_id")