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THIRD-PARTY-NOTICES.md

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Histone Modification ChIP-seq Similarity Metric: Correlation - utilizes the following third party software (without modification or redistribution).

  1. R: GPL-2/3, Copyright © 1997 – 2018 Robert Gentleman, Ross Inaka and other contributors, The R Foundation. All rights reserved.
  2. R Packages:
    • Plyr: MIT, Copyright © 2014 Hadley Wickham. All rights reserved.
    • Tidyr: MIT, Copyright © 2014 Hadley Wickham and RStudio. All rights reserved.
    • Dplyr: MIT, Copyright © 2013 – 2015 RStudio. All rights reserved.
    • Reshape: MIT, Copyright © 2008 - 2016 Hadley Wickham. All rights reserved.
    • Optparse: GPL-3, Copyright © 2008 – 2018 Trevor L. Davis, Allen Day, Python Software Foundation, and other contributors. All rights reserved.
    • Fbasics: GPL-3, Copyright © 2008 – 2018 Trevor L. Davis, Allen Day, Python Software Foundation, and other contributors. All rights reserved.
    • goftest: GPL-3, Copyright © 2017 Julian Faraway, George Marsaglia, John Marsaglia, Adrian Baddeley. All rights reserved.
  3. Docker: Apache 2.0, Copyright © 2013 - 2018 Docker, Inc. All rights reserved.
  4. Samtools: Creative Commons, Copyright © 2008 - 2018 Genome Research Ltd. and Samtools contributors. All rights reserved.
  5. IGVTools: MIT, Copyright © 2013 – 2018 Broad Institute, Inc. and the Regents of the University of California. All rights reserved.
  6. OpenJRE8: GPLv2, Copyright © 2018 Oracle Corporation and/or its affiliates. All rights reserved.
  7. WOMTool: Apache 2.0, Copyright © 2015 Broad Institute, Inc. All rights reserved.
  8. Alpine (Docker): BSD-2, Copyright © 2015 Glider Labs, LLC. All rights reserved.
  9. Google Cloud SDK: Apache 2.0, Copyright © 2013 Google, Inc. All rights reserved.