Added framework for spectral distortions likelihoods, plus mock FIRAS…

… and PIXIE (D. C. Hooper, M. Lucca, N. Schoeneberg). Added new Pantheon likelihood with prior on the absolute magnitude (D. Camarena). Various bugfixes.

VERSION

@@ -1 +1 @@
-3.4.0
+3.5.0

changelog.dat

@@ -1,5 +1,10 @@
-v3.4.0
-	+ Added BBN likelihoods from 1907.11594 (N. Schoeneberg, D. C. Hooper)
+v3.5.0  + Added framework for spectral distortions likelihoods, plus mock FIRAS and PIXIE (D. C. Hooper, M. Lucca, N. Schoeneberg)
+	+ Added new Pantheon likelihood with prior on the absolute magnitude (D. Camarena)
+	+ Updated Pantheon likelihood to latest value
+	+ Various bugfixes related to python2 / python3 compatibility (D. C. Hooper, N. Schoeneberg)
+	+ Various additional bugfixes
+---------------------------------------------------------------------
+v3.4.0  + Added BBN likelihoods from 1907.11594 (N. Schoeneberg, D. C. Hooper)
 	+ Added H0LICOW likelihoods from 1907.04869 (S. Taubenberger, S. Suyu)
 	+ New feature: experiment specifications passed in .param files now overwrite ones in .data files, which allows for testing different likelihood specifications simultaneously (N. Schoeneberg)
 	+ New plotting features: to_derive allows to add new parameters in the plot file without overwriting the old parameter, and to_reorder allows to choose the order of parameters for the plots (N. Schoeneberg)

data/Pantheon/pantheon.dataset

@@ -1,5 +1,5 @@
 name = Pantheon
-data_file = data/lcparam_full_long.txt
+data_file = data/lcparam_full_long_zhel.txt
 pecz = 0
 intrinsicdisp = 0
 twoscriptmfit = F

data/spectral_templates/COintegratedTemplate.dat

@@ -0,0 +1,182 @@
+# Frequency in GHz, Intensity in Jy/sr
+8.357700725203175, 0.0009969805387623626
+8.468648883353303, 0.0011937518225327863
+8.573521390822023, 0.001441384662716714
+8.69720536287404, 0.0017813350847471058
+8.830967009837394, 0.002229101097000851
+8.966785889837318, 0.002789419993575114
+9.11242117768354, 0.0034976422623692947
+9.244728839164127, 0.004297971388854657
+9.406837965208648, 0.005454927795136098
+9.551514481910008, 0.006812332162750753
+9.731376232472517, 0.008733895171245
+9.889427996334422, 0.010995731405649937
+10.092757256404406, 0.014355961791682538
+10.309006593374267, 0.01889512648144532
+10.56119016070646, 0.025738427006643784
+10.764626823696883, 0.03326622338941204
+11.032641178292737, 0.04476841204809008
+11.28338482598503, 0.058331416995971046
+11.515385244486028, 0.07448348980946035
+11.782087473905683, 0.0990294117721714
+12.02944196563925, 0.12696276115505167
+12.276797221784484, 0.15759816777710178
+12.492092002079467, 0.19365971852795028
+12.738151313056484, 0.238936279926426
+12.983545804676615, 0.2959917241337259
+13.18326170530718, 0.3507322306181877
+13.471480177898508, 0.4327314687391344
+13.707742502019771, 0.516920702813095
+13.954066927481103, 0.617489210515139
+14.1927791560151, 0.7272663246754576
+14.404992161418948, 0.8496660096570225
+14.65141900639793, 0.9997091856991212
+14.895738262602322, 1.1810105834628617
+15.14413891380736, 1.3797759029491699
+15.41628574003817, 1.6217926441840687
+15.706637270941814, 1.9256119382825219
+16.036438702557405, 2.2817332896568177
+16.40095585416294, 2.7700588965051343
+16.731134424713606, 3.2823516892521765
+17.067957065819623, 3.9051335438235517
+17.404190593875942, 4.553164298314942
+17.73200256499712, 5.266006795030033
+18.119713466422517, 6.127474496984654
+18.492354639112868, 7.101121447987902
+18.904705702064742, 8.296247633209573
+19.359066419641827, 9.790911981407715
+19.83274722392399, 11.719414862003052
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+20.815209873321376, 15.93165128820965
+21.342652319513338, 18.42590744437
+21.892749281521027, 21.224736601571717
+22.457026694191146, 24.399357973397372
+23.074973750118286, 27.99220780693543
+23.730033907298186, 32.637327196949215
+24.52824582659538, 37.8998375074232
+25.46107334786738, 44.81837666402699
+26.384584403139506, 52.15022894848194
+27.44619013594515, 60.43682588736711
+28.57475990194189, 69.19633100645582
+29.348660976821, 75.32360927976919
+29.99048029868956, 80.51618048178929
+30.64634343479548, 85.5466886657386
+31.316555127949513, 90.52500827464945
+31.960726979400885, 95.40678768598309
+32.562856552689325, 99.74258864666972
+33.19040179551053, 104.69758556063417
+33.93064747546157, 110.34365538540078
+34.805315475506696, 117.23773131078208
+35.79352399892869, 124.56253687529762
+36.809786985984005, 132.61260861408755
+37.93529270608102, 140.61366318359902
+39.17823130569789, 148.79656035502458
+40.35900877687321, 159.69804662224522
+41.54013450086244, 169.33327511991655
+42.84661144470468, 179.91291788499228
+44.06313214135528, 191.15355797004142
+45.25656391699511, 202.4820005000468
+46.511887557674825, 216.6591989148876
+47.680526996446034, 229.96328538714565
+48.8889025503434, 243.5917309687225
+50.12787814563502, 260.9107173974436
+51.24586704139612, 276.6525153266459
+52.388794714380595, 292.75208228109136
+54.26610851253053, 323.54005646060193
+56.11541617472523, 353.6150826912927
+57.978524029011524, 387.65867432034383
+60.03068224338432, 426.2694747536518
+62.129124813569945, 466.8359494027141
+64.21913693654325, 511.26298400954454
+66.4357783358324, 564.4607484894502
+68.6706714599847, 616.9308259281694
+70.80033186910771, 667.501923534733
+72.93412375305205, 723.6788940718204
+75.54770045928562, 790.949271532663
+77.92367657548363, 858.3821598021366
+80.61342204431196, 929.6840941725576
+83.53762749213769, 1013.0295700662429
+86.93591513418795, 1110.5569852687133
+89.9367540322083, 1199.1667112388234
+93.23872497498641, 1300.0885972007204
+96.7029501399203, 1406.6595522949196
+100.55154047140465, 1509.7175783367138
+104.73085922019779, 1623.6026759204808
+107.56749355805721, 1704.2597588962296
+110.80955391003879, 1781.7105491293385
+114.19772579998113, 1877.7935878550174
+117.34060082316361, 1947.3314372714774
+120.82601420768721, 2011.3017391156047
+124.7320680202745, 2068.9972524335826
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+132.08392951534233, 2171.7805783920235
+136.18052430667998, 2225.071446292766
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+149.18560505489882, 2256.7596229661185
+154.59786676769514, 2234.0795327694186
+160.6829693112372, 2202.7098174411785
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+171.4953593046667, 2058.5744459056796
+176.25312342904377, 1973.0702582787987
+181.56610484085937, 1874.0040153677942
+187.35696158100603, 1767.3713592590939
+192.67749387019333, 1663.442426117451
+197.9811001748836, 1559.3121606133232
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+206.7372890262835, 1377.1364905996597
+210.6330966301419, 1297.4648903083526
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+217.2592232648475, 1172.813302092623
+220.60342290110103, 1094.9631552493834
+226.0037040584581, 1012.0068570765214
+231.2418535790821, 920.340910744561
+235.39983245382803, 848.897671691299
+240.95816955676287, 756.5667809847787
+245.18684089514068, 696.4285212936015
+248.96107299063985, 641.0705537981462
+253.43779510533594, 584.1823561684135
+258.3238237084996, 520.6433937248013
+263.75117113124713, 466.8359494027146
+268.72198261560186, 416.9015913981234
+272.9746114979867, 373.061256221688
+278.23741170224207, 329.1435896777374
+283.24106323616365, 288.0589118267384
+289.0696370010158, 250.57931999374617
+294.26796045587145, 221.52758547232526
+300.2600641441175, 188.08913491446773
+305.9194503847163, 161.64549734451361
+311.2230254993175, 139.20051730335655
+316.4170191279066, 120.84464915574695
+322.7917740222554, 101.77801622096104
+329.0855356843564, 85.374047018735
+335.3596819119939, 71.75878732584029
+340.37837054088743, 62.42219002236688
+345.61914809735754, 52.89292225445589
+351.08956077123827, 44.72792876377521
+357.7076813501217, 36.76861985582001
+365.6902574008352, 28.911758505096152
+375.1226831436147, 21.701661758102222
+384.9618511138615, 16.125931096036872
+398.7655520409222, 10.63638052462256
+415.7032401282843, 6.239898480529751
+431.9833659863349, 3.7278393950691218
+444.917975597313, 2.424291939589362
+457.94804998084976, 1.602253830495037
+469.96158561658626, 1.0827505186698083
+479.02581735480373, 0.8013191850653895
+491.80131772105807, 0.530675791475041
+504.70351143432015, 0.34931803465192296
+517.7245504955395, 0.22947501407002727
+531.7586516169805, 0.14565825862587922
+542.2458510433366, 0.10290430819626811
+553.4091311801911, 0.07299391716286406
+563.8445602980028, 0.05188204881856237
+574.2340558376493, 0.03548772897460335
+586.3055294575402, 0.024224898315839526
+600.9237075864795, 0.014767771998294618
+616.9527748416036, 0.008876191267932905
+633.1411312052023, 0.00526013612262693
+645.9031872091965, 0.0035260196354864816
+658.3641052410858, 0.002325700535179767
+671.9200918857149, 0.0015308954227585734
+684.8828148881425, 0.0010138396225614272

data/spectral_templates/SpinningDustTemplate.dat

@@ -0,0 +1,155 @@
+# Frequency in GHz, brightness temperature in Kelvin 
+0.10041471244271409, 0.012356975889893302
+0.10578798676395292, 0.014935449346194772
+0.1158259540968171, 0.021075453618111743
+0.1287177037310759, 0.030083877125832954
+0.14186247951074504, 0.04132724235521
+0.15474931905741957, 0.05333106710095464
+0.1684480402524148, 0.06751296579251898
+0.18450478711319146, 0.08382978043973871
+0.19877415646261848, 0.09967981937227778
+0.21682244939290674, 0.11852668989432101
+0.2340750910987546, 0.13495942793616528
+0.24824572909365372, 0.1476317459810139
+0.26910020274008645, 0.16356009055375298
+0.2951225970321359, 0.1777375370026401
+0.32098100453371076, 0.19165610798116567
+0.35378116971597495, 0.20153555197486756
+0.3892850996951349, 0.21315690467224513
+0.42764021001961605, 0.22588464929957108
+0.46938383641907294, 0.23478927786846907
+0.5122118558758452, 0.24832817450945543
+0.5654931160572434, 0.2677746762511004
+0.6390243648840861, 0.2978147774184492
+0.7191205949299353, 0.34428216548095625
+0.7932649496930896, 0.3911349413055374
+0.8757818920334994, 0.4495480992915958
+0.9580781351594629, 0.5196901055534079
+1.0463659107482872, 0.6066114679183094
+1.1276847884239445, 0.6931726779566529
+1.2234356145419245, 0.8153909983736541
+1.3306320711701503, 0.9591585204839284
+1.420984688237438, 1.0981477754179576
+1.530144271928671, 1.276873282922657
+1.6504321602255074, 1.5078267042568427
+1.7831393692595128, 1.7566208025043901
+1.9201195582953647, 2.0623526109338894
+2.0693426607299585, 2.4448133346858754
+2.21721828280278, 2.859245529751954
+2.411489187346267, 3.389489053044695
+2.6010614697238714, 4.033631079691105
+2.8219155479790086, 4.818781871928012
+3.056434511006667, 5.779064149491646
+3.307691673770649, 6.864041130757049
+3.600501905207075, 8.20013439890325
+3.89972630042082, 9.720839112753307
+4.301804466914964, 12.001006175354824
+4.6826175794369345, 14.504281335299654
+5.148261538635148, 17.59761958259494
+5.641412849879336, 21.18621263289871
+6.238610811318736, 26.358794185004093
+6.979818074434171, 32.66770289908337
+7.7702209801974265, 40.879873272767995
+8.664528831678087, 49.59835250079278
+9.605687032997231, 59.36738520909355
+10.587265746133673, 69.43103932062478
+11.678857327556276, 79.80005993390651
+12.712716965717904, 87.72886192390678
+13.5646512503894, 93.32735608188113
+14.234943401518716, 96.25918853596674
+14.826971166986127, 99.09137454472327
+15.507969094978971, 101.80988154957109
+16.20676196745765, 103.19697614335585
+16.90889651096851, 103.79721550858774
+17.700229891518177, 104.40094613208174
+18.497806570558087, 104.40094613208174
+19.299197310944756, 104.19931342225581
+20.227612388969803, 102.89815936887082
+21.077635977588088, 101.4170042875495
+21.97251426711752, 99.66773391085484
+22.810343481848165, 97.75946429833427
+23.699820240973338, 95.51770691837507
+24.4810577952722, 93.41760981021974
+25.20407004925364, 91.36368642216266
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+27.0951366953146, 84.97466738145793
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+233.8369371646755, 0.000008993324494244275
+241.66512786972436, 0.000006027409013489761
+251.56583836501224, 0.000003879829852925803

input/base2018TTTEEE.param

@@ -101,7 +101,11 @@ data.parameters['sigma8']          = [0, None, None, 0,     1,   'derived']
 
 # Other cosmo parameters (fixed parameters, precision parameters, etc.)
 
-data.cosmo_arguments['sBBN file'] = data.path['cosmo']+'/bbn/sBBN.dat'
+data.cosmo_arguments['sBBN file'] = data.path['cosmo']+'/external/bbn/sBBN.dat'
+# BBN file path is automatically set to match CLASS version if 'sBBN file' is requested
+# You can force the code to use the exact BBN file passed above with flag
+#data.custom_bbn_file = True
+
 data.cosmo_arguments['k_pivot'] = 0.05
 
 # The base model features two massless