From 562ebaade0e9e60e0b97b7b090dddd6ac69218df Mon Sep 17 00:00:00 2001
From: Will Graham <32364977+willGraham01@users.noreply.github.com>
Date: Mon, 26 Feb 2024 16:21:43 +0000
Subject: [PATCH] bg-atlasapi -> brainglobe-atlasapi (#169)
* bg-atlasapi -> brainglobe-atlasapi
* Update pyproject.toml
* Linting pass
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
---
brainglobe_segmentation/atlas/utils.py | 3 ++-
pyproject.toml | 6 ++++--
tests/conftest.py | 2 +-
3 files changed, 7 insertions(+), 4 deletions(-)
diff --git a/brainglobe_segmentation/atlas/utils.py b/brainglobe_segmentation/atlas/utils.py
index b3e2d4c..9d5dd08 100644
--- a/brainglobe_segmentation/atlas/utils.py
+++ b/brainglobe_segmentation/atlas/utils.py
@@ -36,7 +36,8 @@ def structure_from_viewer(coordinates, atlas_layer, atlas):
Layer, which contains the annotation / region
information for every structure in the (registered)
atlas
- atlas : Brainglobe atlas (bg_atlasapi.bg_atlas.BrainGlobeAtlas)
+ atlas : Brainglobe atlas
+ (brainglobe_atlasapi.bg_atlas.BrainGlobeAtlas)
Returns
-------
diff --git a/pyproject.toml b/pyproject.toml
index 0591e56..c2521a4 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,7 +18,7 @@ classifiers = [
]
requires-python = ">=3.9"
dependencies = [
- "bg-atlasapi",
+ "brainglobe-atlasapi >=2.0.1",
"brainglobe-napari-io >=0.3.0",
"brainglobe-utils >=0.4.0",
"napari >=0.4.5",
@@ -80,9 +80,11 @@ line-length = 79
[tool.ruff]
line-length = 79
exclude = ["__init__.py", "build", ".eggs"]
-select = ["I", "E", "F"]
fix = true
+[tool.ruff.lint]
+select = ["I", "E", "F"]
+
[tool.tox]
legacy_tox_ini = """
# For more information about tox, see https://tox.readthedocs.io/en/latest/
diff --git a/tests/conftest.py b/tests/conftest.py
index 0000534..02a4a62 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -2,7 +2,7 @@
from pathlib import Path
import pytest
-from bg_atlasapi import BrainGlobeAtlas
+from brainglobe_atlasapi import BrainGlobeAtlas
from brainglobe_segmentation.segment import SegmentationWidget