example_config.yml

db:
    name: mimic
    host: 127.0.0.1
    user: some_db_user
    pw: some_db_password
save_intermediate: True
csv_log: False # not needed, defaults to False
cohort:
    icd_codes: # could also be []
        - M54.5
        - M54.0
    icd_version: 10
    icd_seq_num: 1
    drg_codes: [] # could also be a list
    drg_ontology: APR
    age:
        - 0:25
        - 50:90
event_type: admission
include_medications: False # only if POE type
case_notion: hospital admission
case_attributes: [] # could also be None. [] uses default case attributes
prompt_case_attributes: False # setting true forces case attributes to be determined if not provided
low_level_tables: # only if event type OTHER
    - procedureevents
    - labevents
additional_event_attributes: # could be []
    - 
        start_column: a
        end_column: b
        time_column: c
        table_to_aggregate: d
        column_to_aggregate: f
        aggregation_method: g
        filter_column: h # can be omitted
        filter_values:
            - one
            - other
    -
        start_column: a
        end_column: b
        time_column: c
        table_to_aggregate: d
        column_to_aggregate: f
        aggregation_method: g
        filter_column: h # can be omitted