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foundation_01.cgi_backup
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#!/usr/bin/perl
use CGI qw(:cgi);
print <<EndOfHTML;
Content-type: text/html
<style>
span {
display: inline-block;
vertical-align: middle;
line-height: 85px;
font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
font-size: 24px;
font-style: normal;
font-variant: normal;
font-weight: 500;
padding-left: 40px;
}
li {
font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
font-style: normal;
font-variant: normal;
}
body {
font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
font-style: normal;
font-variant: normal;
}
/* for visual purposes */
#column-content {
border: 1px solid red;
position: relative;
}
.right {
position: absolute;
right: 0px;
width: 864px;
padding: 10px;
}
figure figcaption {
text-align: justify;
}
</style>
<HTML>
<HEAD>
<TITLE>Foundation - Platypus Lab</TITLE>
</HEAD>
<BODY>
<h1><img src="lablogo.png" alt="lablogo" style="width:160px;height:89px;float:left;"><img src="logo.jpg" alt="CABD" style="width:160px;height:89px;float:left;"><span> Foundation: Protein sequence features visualizer</span></h1>
<FORM METHOD="POST" ACTION="http://www.pvcbacteria.org/foundation/prg/foundation_03.pl">
<li>Job name<p><textarea name="nam" rows="1" cols="10" id="seq_text">MySeq</textarea>
(Default identifier)</li><figure class="right">
<img src="foundation_Q6GZW6_sml.png" alt="The Pulpit Rock" width="864" "float:right">
<img src="foundation_Q91G88_sml.png" alt="The Pulpit Rock" width="864" "float:right">
<img src="foundation_P05067_sml.png" alt="The Pulpit Rock" width="864" "float:right">
<figcaption align:center><br>Foundation visualization of Q91G88,Q6GZW6 and P05067.<p> Fuchsia: Alpha helix<br>Cyan: Beta sheet<br> Green: TMH <br> Line underneath: Disorder prediction</figcaption>
</figure>
<div class="row">
<li> Max. PSI-BLAST iterations. <br></br></li>
Warning: More rounds will results in longer processing time and might lead to divergence of the profile. <br></br> This leads to a difference in secondary structure predictions (as can be seen in this <a href="../tmpl/profdivrg.gif">example</a>).<br></br> Use with caution.
<br></br>
<div class="formw"><select name="mxrnd" onchange="" size="1">
<option value="1" selected="selected">1</option>
<option value="2" >2</option>
<option value="3" >3</option>
<option value="4" >4</option>
<option value="5" >5</option>
<option value="6" >6</option>
<option value="8" >8</option>
</select></div>
</div>
<br></br>
<li>Sequence in <a href="http://en.wikipedia.org/wiki/FASTA_format">FASTA format</a>:</p><textarea name="seq" rows="10" cols="50" id="seq_text"></textarea><br></br></li>
<INPUT TYPE="submit">
</FORM>
<FORM METHOD="POST" ACTION="http://www.pvcbacteria.org/foundation/prg/foundation_01.cgi">
<INPUT type="submit" name=".defaults" value="Reset">
<br/>
</FORM>
Foundation uses:<br>
PSIPRED for Secondary Structure Prediction<br>
IUPred for Disorder Prediction<br>
and TMHMM for Transmembrane helices prediction<p>
</BODY>
</HTML>
EndOfHTML