test-overall.yml

name: Python package

on: [push, pull_request]

jobs:
  tests:

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        include:
          #- python-version: "3.7"
          #  sundials-version: "7.1.1"
          #  tox-env: py37-test
          #  sundials-precision: double
          #  sundials-index-size: 64
          - python-version: "3.8"
            sundials-version: "7.1.1"
            tox-env: py38-test
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.9"
            sundials-version: "7.1.1"
            tox-env: py39-test
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.10"
            sundials-version: "7.1.1"
            tox-env: py310-test
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.11"
            sundials-version: "7.1.1"
            tox-env: py311-test
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.12"
            sundials-version: "7.1.1"
            tox-env: py312-test
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.13"
            sundials-version: "7.1.1"
            tox-env: py313-test
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.11"
            sundials-version: "7.1.1"
            tox-env: apidocs
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.11"
            sundials-version: "7.1.1"
            tox-env: docs
            sundials-precision: double
            sundials-index-size: 64
          - python-version: "3.11"
            sundials-version: "7.1.1"
            tox-env: py311-test
            sundials-precision: double
            sundials-index-size: 32
          #- python-version: "3.11"
          #  sundials-version: "7.1.1"
          #  tox-env: py311-test
          #  sundials-precision: single
          #  sundials-index-size: 64
          - python-version: "3.11"
            sundials-version: "7.1.1"
            tox-env: py311-test
            sundials-precision: extended
            sundials-index-size: 64
          #- python-version: "3.12"
          #  sundials-version: "7.1.1"
          #  tox-env: py312-notebooks
          #  sundials-precision: double
          #  sundials-index-size: 64

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install build dependencies
      run: sudo apt-get install gfortran liblapack-dev

    - name: Sundials cache
      uses: actions/cache@v4
      with:
        path: ~/sundials
        key: ${{ runner.os }}-sundials-${{ matrix.sundials-version }}
        restore-keys: |
          ${{ runner.os }}-sundials-

    - name: Install sundials
      run: |
        source ci_support/ensure_sundials_installed.sh &&
        printf "export LD_LIBRARY_PATH=$LD_LIBRARY_PATH\n export LIBRARY_PATH=$LIBRARY_PATH\n export CPATH=$CPATH" > sundials_env.sh
      env:
        SUNDIALS_VERSION: ${{ matrix.sundials-version }}
        SUNDIALS_PRECISION: ${{ matrix.sundials-precision }}
        SUNDIALS_INDEX_SIZE: ${{ matrix.sundials-index-size }}

    - name: Get pip cache dir
      id: pip-cache
      run: |
        echo "::set-output name=dir::$(pip cache dir)"

    - name: pip cache
      uses: actions/cache@v4
      with:
        path: ${{ steps.pip-cache.outputs.dir }}
        key: ${{ runner.os }}-pip-1
        restore-keys: |
          ${{ runner.os }}-pip-

    - name: Install python dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install "setuptools<=64.0.0"
        python -m pip install --upgrade tox

    - name: Run tests
      run: |
        cat sundials_env.sh
        source sundials_env.sh &&
        env | sort &&
        tox
      env:
        TOXENV: ${{ matrix.tox-env }}
        UPLOAD_SCIKITS_ODES_API_DOCS: ${{ github.repository == 'bmcage/odes' && 'true' || 'false' }}
        GITHUB_ACTOR: ${{ secrets.GITHUB_ACTOR }}
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        API_DOCS_OUT_DIR: /tmp/new_sundials_docs