pyproject.toml

[tool.black]
line-length = 110

[[tool.mypy.overrides]]
module = [
    "app.*",
    "colorama.*",
    "credentials.*",
    "dataset.*",
    "dill.*",
    "flask.*",
    "ftputil.*",
    "gspread.*",
    "humanize.*",
    "h5py.*",
    "ijson.*",
    "ipysheet.*",
    "IPython.*",
    "ipywidgets.*",
    "labkey.*",
    "matchms.*",
    "matplotlib.*",
    "metatlas.h5_query.*",
    "metatlas.helpers.*",
    "metatlas.kbase.*",
    "metatlas.metatlas_objects.*",
    "metatlas.mzml_loader.*",
    "metatlas.plotting.*",
    "metatlas.object_helpers.*",
    "networkx.*",
    "numpy.fft.fftpack",
    "numpy.testing.decorators",
    "oauth2client.*",
    "pandas.*",
    "papermill.*",
    "pathlib2.*",
    "pexpect.*",
    "PIL.*",
    "pubchempy.*",
    "pymzml.*",
    "pyteomics.*",
    "qgrid.*",
    "rdkit.*",
    "scipy.*",
    "sklearn.*",
    "tables.*",
    "tqdm.*",
    "traitlets.*",
    "werkzeug.utils.*",
    "xmltodict.*",
]
ignore_missing_imports = true

[tool.mypy]
show_error_codes = true

[tool.pylint.MASTER]
extension-pkg-allow-list = [
    "rdkit"
]

[tool.pylint.messages_control]
disable = "duplicate-code"

[tool.pylint.format]
max-line-length = "110"

[tool.pylint.TYPECHECK]
generated-members = "pandas.*"

[tool.pytest.ini_options]
filterwarnings = "ignore::DeprecationWarning:dataset.*:"

[tool.nbqa.addopts]
pylint = [
    "--disable=ungrouped-imports"
]