SB Min recs

--min_recs, -min

Implemented in version 1.3

Description

Return the shortest sequence(s)

Argument

Number ( int )

Optional. Specify an integer value for the number of records to return (default=1)

Example

Input file: Mnemiopsis_pep.fa

>Mle-Panxα12 cDNA - ML25997a.
MVIDILSGFKGITPFKGITLDDGWDQINRSFMFVLCVLMGTVVTVRQYAGGIISCDGFTK
YSGSFSEDYCWTQGLYTIKEAYDLLTMNVPYPGVIPEDMPTCIERELINGGRVSCPDPET
VKPPTRVYHLWYQWVPFYFWLAAAAFFFPYLIYKHFGVGDLKPLIQMLHNPIVDEGDQNC
MAEKASMWLFYKLNVFMNENTIFAILTEKHRLFFIVMLVKVLYLIISILALYLTDEMFHI
GSFVSYGSEWATSLPEGDNETTLVKDKLFPKMVACEIKRWGPTGLEEEQGMCVLAPNVIN
QYLFLILWFAIIFCIACNCLSVLFALTKLVFVLGSYKRLLASAFLKDELHYKHMFFNIGT
SGRVLLQIVATNVSPRVFESIMANLATKLIAERLKGNGKGSV*
>Mle-Panxα9 cDNA - ML47742a.
MLDILSKFKGVTPFKGITIDDGWDQLNRSFMFVLLVVMGTTVTVRQYTGSVISCDGFKKF
GSTFAEDYCWTQGLYTVLEGYDQPSQNIPYPGLLPDEAPPCTPVRLKDGTRLKCPDPDQL
LSPTRISHLWYQWVPFYFWLAAAAFFMPYLLYKNFGMGDIKPLVRLLHNPVESDQELKKM
TDKAATWLFYKFDLYMSEQSLLASLTRKHGLGLSMVFVKILYAAVSFGCFLLTAEMFSIG
DFKTYGSEWIKKLKLEDNLATEEKDKLFPKMVACEVKRWGASGIEEEQGMCVLAPNVINQ
YLFLILWFCLVFVMFCNIVSIFASLIKLLFTYGSYRRLLSTAFLRDDSAIKHMYFNVGSS
GRLILHVLANNTAPRVFEDILLTLAPKLIQRKLRGNGKAL*
>Mle-Panxα10B cDNA - ML32831a-2.
MRLSEKSTSHDCKACITRSHNEDCARRWGITIDDGWDQLNRSFMFGLLVVMGTTVTVRQY
TGSVISCDGFKKFGSTFAEDYCWTQGQYTVLEGYDQPNQNIPCPVPRPPSRRGSTLNTMS
QTQGFLHNPVESDQELKKMTDKAATWLFYKFDLYMSEQSLLASLTNKHGLGLSVVFVKIL
YAAVSFGCFLLTADMFSIGDFKTYGSEWINKLKLEDNLATEEKDKLFPKMVACEVKRWGA
SGIEEEQGMCVLAPNVINQYLFLILWFCLVFVMFCNIVSIFASLIKLLFTYGSYRRLLST
AFLRDDSAIKHMYFNVGSSGRLILHVLANNTAPRVFEDILLTLAPKLIQRKLRAKDYD*

Usage

Usage example 1

$: sb Mnemiopsis_pep.fa -min

Output

>Mle-Panxα10B cDNA - ML32831a-2.
MRLSEKSTSHDCKACITRSHNEDCARRWGITIDDGWDQLNRSFMFGLLVVMGTTVTVRQY
TGSVISCDGFKKFGSTFAEDYCWTQGQYTVLEGYDQPNQNIPCPVPRPPSRRGSTLNTMS
QTQGFLHNPVESDQELKKMTDKAATWLFYKFDLYMSEQSLLASLTNKHGLGLSVVFVKIL
YAAVSFGCFLLTADMFSIGDFKTYGSEWINKLKLEDNLATEEKDKLFPKMVACEVKRWGA
SGIEEEQGMCVLAPNVINQYLFLILWFCLVFVMFCNIVSIFASLIKLLFTYGSYRRLLST
AFLRDDSAIKHMYFNVGSSGRLILHVLANNTAPRVFEDILLTLAPKLIQRKLRAKDYD*

Usage example 2

$: sb Mnemiopsis_pep.fa -min 2

Output

>Mle-Panxα9 cDNA - ML47742a.
MLDILSKFKGVTPFKGITIDDGWDQLNRSFMFVLLVVMGTTVTVRQYTGSVISCDGFKKF
GSTFAEDYCWTQGLYTVLEGYDQPSQNIPYPGLLPDEAPPCTPVRLKDGTRLKCPDPDQL
LSPTRISHLWYQWVPFYFWLAAAAFFMPYLLYKNFGMGDIKPLVRLLHNPVESDQELKKM
TDKAATWLFYKFDLYMSEQSLLASLTRKHGLGLSMVFVKILYAAVSFGCFLLTAEMFSIG
DFKTYGSEWIKKLKLEDNLATEEKDKLFPKMVACEVKRWGASGIEEEQGMCVLAPNVINQ
YLFLILWFCLVFVMFCNIVSIFASLIKLLFTYGSYRRLLSTAFLRDDSAIKHMYFNVGSS
GRLILHVLANNTAPRVFEDILLTLAPKLIQRKLRGNGKAL*
>Mle-Panxα10B cDNA - ML32831a-2.
MRLSEKSTSHDCKACITRSHNEDCARRWGITIDDGWDQLNRSFMFGLLVVMGTTVTVRQY
TGSVISCDGFKKFGSTFAEDYCWTQGQYTVLEGYDQPNQNIPCPVPRPPSRRGSTLNTMS
QTQGFLHNPVESDQELKKMTDKAATWLFYKFDLYMSEQSLLASLTNKHGLGLSVVFVKIL
YAAVSFGCFLLTADMFSIGDFKTYGSEWINKLKLEDNLATEEKDKLFPKMVACEVKRWGA
SGIEEEQGMCVLAPNVINQYLFLILWFCLVFVMFCNIVSIFASLIKLLFTYGSYRRLLST
AFLRDDSAIKHMYFNVGSSGRLILHVLANNTAPRVFEDILLTLAPKLIQRKLRAKDYD*