PB List IDs

--list_ids, -li

Description

Output columns all taxa/leaf identifiers

Argument

Number of columns ( int )

Optional. Organize the list of ids into the specified number of tab separated columns. By default, only a single column will be displayed.

Examples

Input file: single_tree.nwk

((((penHA34a:1.0,penHA34b:1.0,penHA32b:1.0,penHA32a:1.0,penSH30b:1.0,penSH30a:1.0,penSH28b:1.0,penSH28a:1.0,penIT13b:1.0,penIT13a:1.0,penIT12a:1.0,firSA26b:1.0,firGU7b:1.0,firGU8b:1.0,firSP18b:1.0,firSP20b:1.0,firSP36b:1.0,firSP39b:1.0,penSH31a:1.0,penSH31b:1.0):1.0,(firSP19b:1.0,(firSP17b:1.0,penIT12b:1.0):1.0):1.0):1.0,firSA24a:1.0,firSA24b:1.0,firSA25a:1.0,firSA26a:1.0,firGU7a:1.0,firGU8a:1.0,firSP17a:1.0,firSP18a:1.0,firSP19a:1.0,firSP20a:1.0,firSP36a:1.0,firSP39a:1.0,(firSA25b:1.0,firSP40b:1.0):1.0,firSP40a:1.0,penIT11b:1.0,penIT11a:1.0):1.0,(ovi47a:1.0,ovi47b:1.0):1.0):1.0;

Usage example 1

$: pb single_tree.nwk -li

Output

#### tree_1 ####
penHA34a
penHA34b
penHA32b
penHA32a
penSH30b
penSH30a
penSH28b
penSH28a
penIT13b
penIT13a
penIT12a
firSA26b
firGU7b
firGU8b
firSP18b
firSP20b
firSP36b
firSP39b
penSH31a
penSH31b
firSP19b
firSP17b
penIT12b
firSA24a
firSA24b
firSA25a
firSA26a
firGU7a
firGU8a
firSP17a
firSP18a
firSP19a
firSP20a
firSP36a
firSP39a
firSA25b
firSP40b
firSP40a
penIT11b
penIT11a
ovi47a
ovi47b

Usage example 2

$: pb single_tree.nwk -li 3

Output

#### tree_1 ####
penHA34a	penHA34b	penHA32b
penHA32a	penSH30b	penSH30a
penSH28b	penSH28a	penIT13b
penIT13a	penIT12a	firSA26b
firGU7b	firGU8b	firSP18b
firSP20b	firSP36b	firSP39b
penSH31a	penSH31b	firSP19b
firSP17b	penIT12b	firSA24a
firSA24b	firSA25a	firSA26a
firGU7a	firGU8a	firSP17a
firSP18a	firSP19a	firSP20a
firSP36a	firSP39a	firSA25b
firSP40b	firSP40a	penIT11b
penIT11a	ovi47a	ovi47b