RAD-seq analysis

Scripts for software install, assembly, and analysis of RAD-seq data

ipyrad

Complete software documentation here

ipyrad_install.txt: code for ipyrad software installation
- customized for JetStream BioLinux instances
- installs Miniconda, ipyrad, and dependencies
The following scripts set up project directories, download data, and assemble data using ipyrad:
- ipyrad_tutorial.sh: script for introductory tutorial using simulated data
- ipyrad_hibiscus.sh: script for assembly of three empirical samples