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Segmentation fault (core dumped) #277

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DoreenAA2023 opened this issue Jan 6, 2024 · 3 comments
Open

Segmentation fault (core dumped) #277

DoreenAA2023 opened this issue Jan 6, 2024 · 3 comments

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@DoreenAA2023
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DoreenAA2023 commented Jan 6, 2024

I downloaded refseq database and run kaiju for taxonomic assignment of sample DRR496098 downloaded from SRA, in the kaiju/bin directory using the command below;
./kaiju -t ../../kaiju_db/nodes.dmp -f ../../kaiju_db/kaiju_db_refseq.fmi -i ../../MSB7103_Assignment/raw_data/DRR496098_1.fastq -j ../../MSB7103_Assignment/raw_data/DRR496098_2.fastq -o kaiju_output.txt

I keep getting the error below;
Segmentation fault (core dumped)

I made all files in the kaiju/bin readable and executable
I have adequate space available, over 500GB

@pmenzel
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pmenzel commented Jan 8, 2024

How much RAM do you have available? See the README for an estimate of required RAM for each reference database.

@DoreenAA2023
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My computer has 16 GB of RAM available, I chose refseq database that requires 87 (112) GB RAM.

@Aligon1
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Aligon1 commented Jul 17, 2024

I am having this same issue with refseq, how were you able to get it working?

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