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Issue with extracting taxdump #266

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Mayurk619 opened this issue Jul 4, 2023 · 1 comment
Open

Issue with extracting taxdump #266

Mayurk619 opened this issue Jul 4, 2023 · 1 comment

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@Mayurk619
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Mayurk619 commented Jul 4, 2023

I cannot seem to figure out if this is an issue or not. I'm using kaiju-makedb in cluster. It required taxdump that is why I added that file in the directory. I also did md5sum for the file but it didn't match with server record. I downloaded the file multiple times manually but wasn't fixed. Is there a way to do it without this?
Kaiju error

This is my job submission script and the command that I used.
kaiju job submit

@pmenzel
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pmenzel commented Jul 4, 2023

How about running kaiju-makedb without the --no-download option? Generally, it downloads all necessary files automatically.

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