Skip to content

Issues: bioinformatics-centre/kaiju

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

53 Open 219 Closed
53 Open 219 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How to deal with classification bias while using single database and its own split version ?
#289 opened Oct 18, 2024 by airmicrobiome
merging kraken2 and kaiju
#288 opened Sep 29, 2024 by DeaconOfBiology
Getting Repeated Species in cell free DNA profiles
#287 opened Sep 2, 2024 by arpit20328
2
No fmi file after kaiju-makedb
#286 opened Aug 28, 2024 by Tpowell7
Alpha diversity
#285 opened Aug 5, 2024 by RarltyOne
kaiju2table taxonomic ranks for viruses
#283 opened May 28, 2024 by jbergt
Not able to download any kaiju_database from https://bioinformatics-centre.github.io/kaiju/downloads.html
#282 opened May 10, 2024 by arpit20328
kaiju-mergeOutputs for merging all kaiju outputs from different databases
#279 opened Feb 20, 2024 by EorgeKit
2
Fungal reads - Which is the best database?
#278 opened Feb 5, 2024 by andressamv
1
Segmentation fault (core dumped)
#277 opened Jan 6, 2024 by DoreenAA2023
3
makedb progenomes fails
#273 opened Nov 23, 2023 by Mewgia
9
more than 73% is unclassified.
#271 opened Oct 17, 2023 by jojyjohn28
2
Read classification using database of single pangenome
#267 opened Jul 23, 2023 by snayfach
Issue with extracting taxdump
#266 opened Jul 4, 2023 by Mayurk619
1
Unable to Find Taxon_ID of the Top-hit Species in Kaiju Output File Despite Being the Highest-Reads Species in Kaiju2table Output
#265 opened Jun 29, 2023 by SenyuanGu
4
converting kaiju output to biom format
#264 opened Jun 16, 2023 by najoshi
Error cannot open file
#263 opened Jun 5, 2023 by akhwela
1
webserver is down
#262 opened May 19, 2023 by rec3141
eukdetect gets stuck on taxonomize
#260 opened Apr 3, 2023 by umerijaz
Is there a way to reduce memory requirement?
#258 opened Mar 20, 2023 by aelbehery
4
creating custom db causes classification issues
#257 opened Feb 23, 2023 by najoshi
3
unable to custom DB
#255 opened Feb 8, 2023 by juejun14
4
Different result from blast hit
#253 opened Feb 6, 2023 by MonicaSteffi
4
kaiju-makedb -s nr_euk fails
#252 opened Jan 23, 2023 by ko519
1
Question on kaiju classification from PacBio data
#246 opened Nov 9, 2022 by DaRinker
3
ProTip! Updated in the last three days: updated:>2024-12-17.