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bbtmstoolold.html
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bbtmstoolold.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
<title>Beta Barrel TransMembrane Segment Search Tool</title>
<SCRIPT TYPE="text/javascript">
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function MM_jumpMenuGo(selName,targ,restore){ //v3.0
var selObj = MM_findObj(selName); if (selObj) MM_jumpMenu(targ,selObj,restore);
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</SCRIPT>
<style type="text/css">
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</style>
<script type="text/javascript">
var _gaq = _gaq || [];
_gaq.push(['_setAccount', 'UA-2264537-11']);
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</head>
<body>
<table width="650" border="0" align="center" cellpadding="0" cellspacing="0">
<tr>
<td><a name="top" id="top"></a></td>
</tr>
<tr>
<td><table width="98%" border="0" align="center" cellpadding="0" cellspacing="0">
<tr>
<td width="25%"><a href="http://www.uic.edu/uic/" target="_blank" class="style4">UIC</a></td>
<td width="45%"><div align="center"><a href="http://gila.bioengr.uic.edu/lab/" target="_blank" class="style4">Jie Liang Lab</a></div></td>
<td width="30%"><div align="right"><a href="http://gila.bioengr.uic.edu/lab/" target="_blank"></a><a href="http://www.bioe.uic.edu/BIOE/WebHome" target="_blank" class="style4">Department of Bioengineering</a></div></td>
</tr>
</table></td>
</tr>
<tr>
<td> </td>
</tr>
<tr>
<td><table width="98%" border="0" align="center" cellpadding="0" cellspacing="0">
<tr>
<td width="42%"><div align="center"><img src="images/logowhite.jpg" width="158" height="100" /></div></td>
<td width="58%"><p class="style8">bbTM-ST<br />
<span class="style7">β-Barrel TransMembrane Search Tool</span></p>
</td>
</tr>
</table></td>
</tr>
<tr>
<td> </td>
</tr>
<tr>
<td><blockquote>
<p><span class="style9"><strong>BLAST</strong> searches using the <strong>bbTM-out </strong>scoring matrix against the <strong>NR-NCBI database</strong>.</span></p>
</blockquote></td>
</tr>
<tr>
<td> </td>
</tr>
<tr>
<td height="26"><p>><em>Transmembrane fragment search from structures of beta barrel membrane proteins with a solved structure: </em></p>
</td>
</tr>
<tr>
<td><form id="form1" name="form1">
<label>List of PDBs</label>
<select name="PDB-SELECT" onchange="MM_jumpMenu('parent',this,0)">
<option>Select a beta barrel PDB</option>
<option value="supmat/blast2nr/in1A0S.blast2nr.bbTM-out">1A0S</option>
<option value="supmat/blast2nr/in1BXW.blast2nr.bbTM-out">1BXW</option>
<option value="supmat/blast2nr/in1E54.blast2nr.bbTM-out">1E54</option>
<option value="supmat/blast2nr/in1EK9.blast2nr.bbTM-out">1EK9</option>
<option value="supmat/blast2nr/in1FEP.blast2nr.bbTM-out">1FEP</option>
<option value="supmat/blast2nr/in1I78.blast2nr.bbTM-out">1I78</option>
<option value="supmat/blast2nr/in1K24.blast2nr.bbTM-out">1K24</option>
<option value="supmat/blast2nr/in1KMO.blast2nr.bbTM-out">1KMO</option>
<option value="supmat/blast2nr/in1NQE.blast2nr.bbTM-out">1NQE</option>
<option value="supmat/blast2nr/in1P4T.blast2nr.bbTM-out">1P4T</option>
<option value="supmat/blast2nr/in1PRN.blast2nr.bbTM-out">1PRN</option>
<option value="supmat/blast2nr/in1QD6.blast2nr.bbTM-out">1QD6</option>
<option value="supmat/blast2nr/in1QJ8.blast2nr.bbTM-out">1QJ8</option>
<option value="supmat/blast2nr/in1T16.blast2nr.bbTM-out">1T16</option>
<option value="supmat/blast2nr/in1THQ.blast2nr.bbTM-out">1THQ</option>
<option value="supmat/blast2nr/in1XKW.blast2nr.bbTM-out">1XKW</option>
<option value="supmat/blast2nr/in2F1C.blast2nr.bbTM-out">2F1C</option>
<option value="supmat/blast2nr/in2FCP.blast2nr.bbTM-out">2FCP</option>
<option value="supmat/blast2nr/in2MPR.blast2nr.bbTM-out">2MPR</option>
<option value="supmat/blast2nr/in2OMF.blast2nr.bbTM-out">2OMF</option>
</select>
<input type="button" name="ButtonA" value="Go" onclick="MM_jumpMenuGo('PDB-SELECT','parent',0)" />
</form> </td>
</tr>
<tr>
<td><form action="fproc.php" method ="post">
<textarea rows="8" cols="50" wrap="physical" name="fasta" /></textarea>
<input type="submit" value="Save">
</form> </td>
</tr>
<tr>
<td></td>
</tr>
<tr>
<td height="25"> </td>
</tr>
<tr>
<td>> Provide your own transmembrane segment:</td>
</tr>
<tr>
<td> </td>
</tr>
<tr>
<td> </td>
</tr>
</table>
</body>
</html>