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BioCore, NTNU

The Bioinformatics core facility at NTNU

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  1. epic2 epic2 Public

    Ultraperformant reimplementation of SICER

    Cython 56 10

  2. snpflip snpflip Public archive

    Report reverse and ambiguous strand SNPs in GWAS data

    Python 32 8

  3. epic epic Public

    (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

    Python 31 6

  4. kerneltree kerneltree Public

    Forked from markfasheh/interval-tree

    Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.

    C 25 2

  5. chip_seq_pipeline chip_seq_pipeline Public

    ChIP-Seq Analysis Pipeline with emphasis on differential expression

    Python 9

  6. hisat2_index hisat2_index Public

    Python

Repositories

Showing 8 of 8 repositories
  • epic2 Public

    Ultraperformant reimplementation of SICER

    Cython 56 MIT 10 36 (1 issue needs help) 0 Updated Sep 5, 2021
  • ldetect_original Public
    Python 0 0 0 0 Updated Jan 8, 2020
  • snpflip Public archive

    Report reverse and ambiguous strand SNPs in GWAS data

    Python 32 8 4 0 Updated May 15, 2019
  • kerneltree Public Forked from markfasheh/interval-tree

    Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.

    C 25 6 0 0 Updated Apr 8, 2019
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 0 3,469 0 0 Updated Jan 24, 2019
  • epic Public

    (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

    Python 31 MIT 6 27 0 Updated Nov 21, 2018
  • chip_seq_pipeline Public

    ChIP-Seq Analysis Pipeline with emphasis on differential expression

    Python 9 0 0 0 Updated Oct 16, 2018
  • hisat2_index Public
    Python 0 0 0 0 Updated Jun 21, 2017