From f3b0a4c132198858e00eef06fdb82e90a78136cd Mon Sep 17 00:00:00 2001 From: Fernando Zhapa-Camacho Date: Mon, 18 Nov 2024 10:17:09 +0300 Subject: [PATCH] =?UTF-8?q?=E2=AC=86=EF=B8=8F=20Updated=20scipy=20dependen?= =?UTF-8?q?cies?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .github/workflows/python-package_3_13.yml | 48 ----------------------- README.md | 2 +- docs/source/install/index.rst | 2 +- envs/environment_3_10.yml | 2 +- envs/environment_3_11.yml | 2 +- envs/environment_3_12.yml | 2 +- envs/environment_3_13.yml | 2 +- envs/environment_3_9.yml | 2 +- envs/environment_dev_3_10.yml | 2 +- envs/environment_dev_3_11.yml | 2 +- envs/environment_dev_3_12.yml | 2 +- envs/environment_dev_3_13.yml | 2 +- envs/environment_dev_3_9.yml | 2 +- 13 files changed, 12 insertions(+), 60 deletions(-) delete mode 100644 .github/workflows/python-package_3_13.yml diff --git a/.github/workflows/python-package_3_13.yml b/.github/workflows/python-package_3_13.yml deleted file mode 100644 index 2d0959bb..00000000 --- a/.github/workflows/python-package_3_13.yml +++ /dev/null @@ -1,48 +0,0 @@ -# This workflow will install Python dependencies, run tests and lint with a variety of Python versions -# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions - -name: Python package - -on: - push: - branches: [ "main", develop ] - pull_request: - branches: [ "main", develop ] - -jobs: - build: - - runs-on: ${{ matrix.os }} - strategy: - fail-fast: false - matrix: - os: ["ubuntu-latest"] - python-version: ["3.13"] - defaults: - run: - shell: bash -l {0} - steps: - - uses: actions/checkout@v3 - - uses: conda-incubator/setup-miniconda@v2 - with: - auto-update-conda: true - python-version: ${{ matrix.python-version }} - activate-environment: anaconda-client-env - environment-file: envs/environment_3_13.yml - auto-activate-base: false - channels: conda-forge - use-mamba: true - - name: Install dependencies - run: | - python -m pip install --upgrade pip - python -m pip install flake8 pytest coverage pytest-faulthandler - if [ -f requirements.txt ]; then pip install -r requirements.txt; fi - - name: Lint with flake8 - run: | - # stop the build if there are Python syntax errors or undefined names - # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics - # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide - flake8 mowl --count --exit-zero --max-complexity=20 --max-line-length=127 --statistics - - name: Test with pytest - run: | - pytest -m "not slow" -p no:faulthandler diff --git a/README.md b/README.md index 841e0b09..8cd77c4e 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,7 @@ mainly in Python, but we have integrated the functionalities of [OWLAPI](https:/ - gensim >= 4.3.0 - JPype1 == 1.5.0 - pykeen == 1.10.2 - - scipy < 1.13.0 + - scipy < 1.15.0 ### Install from PyPi diff --git a/docs/source/install/index.rst b/docs/source/install/index.rst index 0fa42922..a91711d5 100644 --- a/docs/source/install/index.rst +++ b/docs/source/install/index.rst @@ -15,7 +15,7 @@ Python requirements - gensim >= 4.3.0 - JPype1 == 1.5.0 - pykeen == 1.10.2 -- scipy < 1.13.0 +- scipy < 1.15.0 Install from source code diff --git a/envs/environment_3_10.yml b/envs/environment_3_10.yml index 92374084..56d6b4c9 100644 --- a/envs/environment_3_10.yml +++ b/envs/environment_3_10.yml @@ -13,7 +13,7 @@ dependencies: - pyyaml - requests - scikit-learn - - scipy<1.13.0 + - scipy<1.15.0 - tqdm - urllib3 - pip diff --git a/envs/environment_3_11.yml b/envs/environment_3_11.yml index 4d65cc5e..bbb07b46 100644 --- a/envs/environment_3_11.yml +++ b/envs/environment_3_11.yml @@ -13,7 +13,7 @@ dependencies: - pyyaml - requests - scikit-learn - - scipy<1.13.0 + - scipy<1.15.0 - tqdm - urllib3 - pip diff --git a/envs/environment_3_12.yml b/envs/environment_3_12.yml index 36ad32fc..ffae78c5 100644 --- a/envs/environment_3_12.yml +++ b/envs/environment_3_12.yml @@ -13,7 +13,7 @@ dependencies: - pyyaml - requests - scikit-learn - - scipy<1.13.0 + - scipy<1.15.0 - tqdm - urllib3 - pip diff --git a/envs/environment_3_13.yml b/envs/environment_3_13.yml index 634a94fd..5a83840e 100644 --- a/envs/environment_3_13.yml +++ b/envs/environment_3_13.yml @@ -13,7 +13,7 @@ dependencies: - pyyaml - requests - scikit-learn - - scipy<1.13.0 + - scipy<1.15.0 - tqdm - urllib3 - pip diff --git a/envs/environment_3_9.yml b/envs/environment_3_9.yml index 82f61bc9..b1e55c72 100644 --- a/envs/environment_3_9.yml +++ b/envs/environment_3_9.yml @@ -13,7 +13,7 @@ dependencies: - pyyaml - requests - scikit-learn - - scipy<1.13.0 + - scipy<1.15.0 - tqdm - urllib3 - pip diff --git a/envs/environment_dev_3_10.yml b/envs/environment_dev_3_10.yml index 858c9e2d..ddd151d3 100644 --- a/envs/environment_dev_3_10.yml +++ b/envs/environment_dev_3_10.yml @@ -16,7 +16,7 @@ dependencies: - protobuf - pyyaml - requests - - scipy<1.13.0 + - scipy<1.15.0 - scikit-learn - urllib3 - pytorch diff --git a/envs/environment_dev_3_11.yml b/envs/environment_dev_3_11.yml index 00c2dea1..9348de02 100644 --- a/envs/environment_dev_3_11.yml +++ b/envs/environment_dev_3_11.yml @@ -16,7 +16,7 @@ dependencies: - protobuf - pyyaml - requests - - scipy<1.13.0 + - scipy<1.15.0 - scikit-learn - urllib3 - pytorch diff --git a/envs/environment_dev_3_12.yml b/envs/environment_dev_3_12.yml index 6cfecca0..f4b9f52c 100644 --- a/envs/environment_dev_3_12.yml +++ b/envs/environment_dev_3_12.yml @@ -16,7 +16,7 @@ dependencies: - protobuf - pyyaml - requests - - scipy<1.13.0 + - scipy<1.15.0 - scikit-learn - urllib3 - pytorch diff --git a/envs/environment_dev_3_13.yml b/envs/environment_dev_3_13.yml index a4864111..f2f85a49 100644 --- a/envs/environment_dev_3_13.yml +++ b/envs/environment_dev_3_13.yml @@ -16,7 +16,7 @@ dependencies: - protobuf - pyyaml - requests - - scipy<1.13.0 + - scipy<1.15.0 - scikit-learn - urllib3 - pytorch diff --git a/envs/environment_dev_3_9.yml b/envs/environment_dev_3_9.yml index c9f50705..84194999 100644 --- a/envs/environment_dev_3_9.yml +++ b/envs/environment_dev_3_9.yml @@ -16,7 +16,7 @@ dependencies: - protobuf - pyyaml - requests - - scipy<1.13.0 + - scipy<1.15.0 - scikit-learn - urllib3 - pytorch