🔧 Dependencies gensim, scipy and numpy moved to pip instead of conda

bio-ontology-research-group · Nov 18, 2024 · d3e2c8c · d3e2c8c
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commit d3e2c8c
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Showing 8 changed files with 20 additions and 20 deletions.
diff --git a/envs/environment_3_10.yml b/envs/environment_3_10.yml
@@ -5,19 +5,19 @@ dependencies:
   - python=3.10
   - click
   - deprecated
-  - gensim>=4.3.0
   - gradle
   - JPype1=1.5.0
   - pandas
   - pytorch
   - pyyaml
   - requests
   - scikit-learn
-  - scipy<1.15.0  
   - tqdm
   - urllib3
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - pykeen==1.10.2
     - temp
 
diff --git a/envs/environment_3_11.yml b/envs/environment_3_11.yml
@@ -5,19 +5,19 @@ dependencies:
   - python=3.11
   - click
   - deprecated
-  - gensim>=4.3.0
   - gradle
   - JPype1=1.5.0
   - pandas
   - pytorch
   - pyyaml
   - requests
   - scikit-learn
-  - scipy<1.15.0  
   - tqdm
   - urllib3
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - pykeen==1.10.2
     - temp
 
diff --git a/envs/environment_3_12.yml b/envs/environment_3_12.yml
@@ -5,19 +5,19 @@ dependencies:
   - python=3.12
   - click
   - deprecated
-  - gensim>=4.3.0
   - gradle
   - JPype1=1.5.0
   - pandas
   - pytorch
   - pyyaml
   - requests
   - scikit-learn
-  - scipy<1.15.0  
   - tqdm
   - urllib3
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - pykeen==1.10.2
     - temp
 
diff --git a/envs/environment_3_9.yml b/envs/environment_3_9.yml
@@ -5,19 +5,19 @@ dependencies:
   - python=3.9
   - click
   - deprecated
-  - gensim>=4.3.0
   - gradle
   - JPype1=1.5.0
   - pandas
   - pytorch
   - pyyaml
   - requests
   - scikit-learn
-  - scipy<1.15.0  
   - tqdm
   - urllib3
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - pykeen==1.10.2
     - temp
 
diff --git a/envs/environment_dev_3_10.yml b/envs/environment_dev_3_10.yml
@@ -7,7 +7,6 @@ dependencies:
   - python=3.10
   - cairo
   - deprecated
-  - numpy
   - networkx
   - click
   - grpcio
@@ -16,17 +15,18 @@ dependencies:
   - protobuf
   - pyyaml
   - requests
-  - scipy<1.15.0
   - scikit-learn
   - urllib3
   - pytorch
-  - gensim>=4.3.0
   - openjdk
   - gradle
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - build
     - pykeen==1.10.2
+    - numpy
     - sphinx-rtd-theme
     - pytest
     - pytest-faulthandler

diff --git a/envs/environment_dev_3_11.yml b/envs/environment_dev_3_11.yml
@@ -7,7 +7,6 @@ dependencies:
   - python=3.11
   - cairo
   - deprecated
-  - numpy
   - networkx
   - click
   - grpcio
@@ -16,17 +15,18 @@ dependencies:
   - protobuf
   - pyyaml
   - requests
-  - scipy<1.15.0
   - scikit-learn
   - urllib3
   - pytorch
-  - gensim>=4.3.0
   - openjdk
   - gradle
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - build
     - pykeen==1.10.2
+    - numpy
     - sphinx-rtd-theme
     - pytest
     - pytest-faulthandler

diff --git a/envs/environment_dev_3_12.yml b/envs/environment_dev_3_12.yml
@@ -7,7 +7,6 @@ dependencies:
   - python=3.12
   - cairo
   - deprecated
-  - numpy
   - networkx
   - click
   - grpcio
@@ -16,17 +15,18 @@ dependencies:
   - protobuf
   - pyyaml
   - requests
-  - scipy<1.15.0
   - scikit-learn
   - urllib3
   - pytorch
-  - gensim>=4.3.0
   - openjdk
   - gradle
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - build
     - pykeen==1.10.2
+    - numpy
     - sphinx-rtd-theme
     - pytest
     - pytest-faulthandler

diff --git a/envs/environment_dev_3_9.yml b/envs/environment_dev_3_9.yml
@@ -7,7 +7,6 @@ dependencies:
   - python=3.9
   - cairo
   - deprecated
-  - numpy
   - networkx
   - click
   - grpcio
@@ -16,17 +15,18 @@ dependencies:
   - protobuf
   - pyyaml
   - requests
-  - scipy<1.15.0
   - scikit-learn
   - urllib3
   - pytorch
-  - gensim>=4.3.0
   - openjdk
   - gradle
   - pip
   - pip:
+    - gensim>=4.3.0
+    - scipy<1.15.0	    
     - build
     - pykeen==1.10.2
+    - numpy
     - sphinx-rtd-theme
     - sphinx-automodapi
     - nose