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@bihealth

Berlin Institute of Health

BIH Core Unit Bioinformatics & BIH HPC IT

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  1. sodar-server sodar-server Public

    SODAR: System for Omics Data Access and Retrieval

    Python 15 3

  2. sodar-core sodar-core Public

    SODAR Core: A Django-based framework for building scientific data management web apps

    Python 9 1

  3. scelvis scelvis Public

    🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

    Python 21 5

  4. digestiflow-server digestiflow-server Public

    🍸 Web-based database system for flow cell management (incl. REST API)

    Python 15 3

  5. altamisa altamisa Public

    AltamISA: a Python API for ISA-Tab files

    Python 5 2

Repositories

Showing 10 of 173 repositories
  • snappy-pipeline Public

    SNAPPY Nucleic Acid Processing in Python

    bihealth/snappy-pipeline’s past year of commit activity
    Python 10 MIT 4 114 (2 issues need help) 21 Updated Feb 6, 2025
  • sodar-core Public

    SODAR Core: A Django-based framework for building scientific data management web apps

    bihealth/sodar-core’s past year of commit activity
    Python 9 MIT 1 254 (2 issues need help) 0 Updated Feb 6, 2025
  • LimsaR Public

    R client for SODAR

    bihealth/LimsaR’s past year of commit activity
    R 0 0 0 0 Updated Feb 6, 2025
  • ood-bih-rstudio-server Public

    Open OnDemand App: RStudio Server

    bihealth/ood-bih-rstudio-server’s past year of commit activity
    Shell 1 MIT 1 1 0 Updated Feb 6, 2025
  • ood-bih-jupyter Public

    Open OnDemand App: Jupyter

    bihealth/ood-bih-jupyter’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Feb 6, 2025
  • dotty Public

    cdot-based transcript projections

    bihealth/dotty’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Feb 3, 2025
  • cubi-tk Public

    CUBI Tooling for SODAR, VarFish et al.

    bihealth/cubi-tk’s past year of commit activity
    Python 5 MIT 5 39 1 Updated Feb 3, 2025
  • ngs-chew Public

    Tasty, tasty, NGS!

    bihealth/ngs-chew’s past year of commit activity
    Python 3 1 14 2 Updated Feb 3, 2025
  • irods-docker Public

    iRODS Docker image for use with SODAR

    bihealth/irods-docker’s past year of commit activity
    Jinja 1 MIT 2 8 0 Updated Feb 3, 2025
  • reev Public

    REEV: Explanation and Evaluation of Variants

    bihealth/reev’s past year of commit activity
    TypeScript 9 MIT 4 39 6 Updated Feb 3, 2025
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