diff --git a/sdrf_pipelines/sdrf/sdrf_schema.py b/sdrf_pipelines/sdrf/sdrf_schema.py index 5b73b0f..3100234 100644 --- a/sdrf_pipelines/sdrf/sdrf_schema.py +++ b/sdrf_pipelines/sdrf/sdrf_schema.py @@ -283,7 +283,7 @@ def validate_columns_order(panda_sdrf): assay_index = cnames.index("assay name") factor_tag = False for idx, column in enumerate(cnames): - error_message, error_type = '', None + error_message, error_type = "", None if idx < assay_index: if "comment" in column: error_message = "The column " + column + " cannot be before the assay name" @@ -295,10 +295,7 @@ def validate_columns_order(panda_sdrf): else: error_type = logging.WARNING else: - if ( - "characteristics" in column - or ("material type" in column and "factor value" not in column) - ): + if "characteristics" in column or ("material type" in column and "factor value" not in column): error_message = "The column " + column + " cannot be after the assay name" error_type = logging.ERROR if "technology type" in column and idx > assay_index + 1: