From 012c54f245d1a506933eb47d2ce6afc91007dfee Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Mon, 23 Dec 2024 07:54:12 +0000 Subject: [PATCH] Make DIANN to mzTab optional --- modules/local/ms2rescore/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/local/ms2rescore/main.nf b/modules/local/ms2rescore/main.nf index a8420356..ef492f07 100644 --- a/modules/local/ms2rescore/main.nf +++ b/modules/local/ms2rescore/main.nf @@ -2,10 +2,10 @@ process MS2RESCORE { tag "$meta.mzml_id" label 'process_high' - conda "bioconda::quantms-rescoring=0.0.2" + conda "bioconda::quantms-rescoring=0.0.3" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/quantms-rescoring:0.0.2--pyhdfd78af_0' : - 'biocontainers/quantms-rescoring:0.0.2--pyhdfd78af_0' }" + 'https://depot.galaxyproject.org/singularity/quantms-rescoring:0.0.3--pyhdfd78af_0' : + 'biocontainers/quantms-rescoring:0.0.3--pyhdfd78af_0' }" // userEmulation settings when docker is specified containerOptions = (workflow.containerEngine == 'docker') ? '-u $(id -u) -e "HOME=${HOME}" -v /etc/passwd:/etc/passwd:ro -v /etc/shadow:/etc/shadow:ro -v /etc/group:/etc/group:ro -v $HOME:$HOME' : ''