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Make DIANN to mzTab optional
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ypriverol committed Dec 23, 2024
1 parent 054d906 commit 012c54f
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions modules/local/ms2rescore/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@ process MS2RESCORE {
tag "$meta.mzml_id"
label 'process_high'

conda "bioconda::quantms-rescoring=0.0.2"
conda "bioconda::quantms-rescoring=0.0.3"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-rescoring:0.0.2--pyhdfd78af_0' :
'biocontainers/quantms-rescoring:0.0.2--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-rescoring:0.0.3--pyhdfd78af_0' :
'biocontainers/quantms-rescoring:0.0.3--pyhdfd78af_0' }"

// userEmulation settings when docker is specified
containerOptions = (workflow.containerEngine == 'docker') ? '-u $(id -u) -e "HOME=${HOME}" -v /etc/passwd:/etc/passwd:ro -v /etc/shadow:/etc/shadow:ro -v /etc/group:/etc/group:ro -v $HOME:$HOME' : ''
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