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Minor changes. #2

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merged 8 commits into from
Dec 3, 2024
Merged

Minor changes. #2

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1e0e4f5
second biggest commit.
ypriverol Dec 3, 2024
74b2a73
Merge branch 'main' of https://github.com/bigbio/quantms-ms2rescore i…
ypriverol Dec 3, 2024
9f8b62f
second biggest commit.
ypriverol Dec 3, 2024
a95ec64
second biggest commit.
ypriverol Dec 3, 2024
08fb4c3
second biggest commit
ypriverol Dec 3, 2024
a0d28d3
Merge remote-tracking branch 'origin/dev' into dev
ypriverol Dec 3, 2024
ee98b08
remove pyarrow
ypriverol Dec 3, 2024
f328b7d
Update .codacy.yml
ypriverol Dec 3, 2024
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17 changes: 17 additions & 0 deletions .codacy.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
engines:
eslint:
enabled: true
pylint:
enabled: true

ignore_patterns:
- "tests/*"

eslint:
enabled: true
config_file: .eslintrc.json
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exclude_paths:
- 'tests/**'

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exclude_paths:
- 'tests/**'
4 changes: 2 additions & 2 deletions README.md
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@@ -1,7 +1,7 @@
# quantms-rescoring

[![Build Status](https://travis-ci.com/compomics/quantms-rescoring.svg?branch=main)](https://travis-ci.com/compomics/quantms-rescoring)
[![codecov](https://codecov.io/gh/compomics/quantms-rescoring/branch/main/graph/badge.svg?token=3ZQZQ2ZQ2D)](https://codecov.io/gh/compomics/quantms-rescoring)
[![Python package](https://github.com/bigbio/quantms-rescoring/actions/workflows/python-package.yml/badge.svg)](https://github.com/bigbio/quantms-rescoring/actions/workflows/python-package.yml)
[![codecov](https://codecov.io/gh/bigbio/quantms-rescoring/branch/main/graph/badge.svg?token=3ZQZQ2ZQ2D)](https://codecov.io/gh/bigbio/quantms-rescoring)
[![PyPI version](https://badge.fury.io/py/quantms-rescoring.svg)](https://badge.fury.io/py/quantms-rescoring)
[![License](https://img.shields.io/badge/license-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)

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3 changes: 1 addition & 2 deletions environment.yml
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@@ -1,5 +1,5 @@
# environment.yml
name: quantmsutils
name: quantms-rescoring
channels:
- bioconda
- conda-forge
Expand All @@ -10,7 +10,6 @@ dependencies:
- pyopenms>=2.4.0
- pandas
- numpy
- pyarrow
- ms2rescore=3.0.3
- deepLC=2.2.38
- psm-utils=0.8.3
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1 change: 0 additions & 1 deletion recipe/meta.yaml
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Expand Up @@ -26,7 +26,6 @@ requirements:
- pyopenms>=2.4.0
- pandas
- numpy
- pyarrow
- ms2rescore=3.0.3
- deepLC=2.2.38
- psm-utils=0.8.3
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