From e52fbf10892f87ef737bb7df62c23260329c5a7a Mon Sep 17 00:00:00 2001
From: Yasset Perez-Riverol <ypriverol@gmail.com>
Date: Tue, 3 Dec 2024 12:01:20 +0000
Subject: [PATCH] second biggest commit.

---
 .github/workflows/python-app.yml     | 2 +-
 .github/workflows/python-package.yml | 2 +-
 pyproject.toml                       | 2 +-
 recipe/meta.yaml                     | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
index 9f25049..851a0a4 100644
--- a/.github/workflows/python-app.yml
+++ b/.github/workflows/python-app.yml
@@ -46,4 +46,4 @@ jobs:
         wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML
     - name: Test percolator ms2rescore
       run: |
-        quantmsutilsc ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
+        rescoring ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 2249c2d..c626044 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -43,4 +43,4 @@ jobs:
         pytest
     - name: Test commandline tool
       run: |
-        quantmsutilsc --help
+        rescoring --help
diff --git a/pyproject.toml b/pyproject.toml
index 616d62e..e9abe97 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -48,7 +48,7 @@ Quantms = "https://quantms.org"
 LICENSE = "https://github.com/bigbio/quantms-rescoring/blob/main/LICENSE"
 
 [tool.poetry.scripts]
-quantmsutilsc = "quantmsrescore.rescoring:main"
+rescoring = "quantmsrescore.rescoring:main"
 
 [tool.isort]
 profile = "black"
diff --git a/recipe/meta.yaml b/recipe/meta.yaml
index 1e044cd..de8543f 100644
--- a/recipe/meta.yaml
+++ b/recipe/meta.yaml
@@ -10,7 +10,7 @@ build:
   entry_points:
     - rescoring=quantmsrescore.rescoring:main
   run_exports:
-    - {{ pin_subpackage('quantms-utils', max_pin="x.x") }}
+    - {{ pin_subpackage('quantms-rescoring', max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   number: 0
   noarch: python