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second biggest commit.
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ypriverol committed Dec 3, 2024
1 parent 1c0c978 commit e52fbf1
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Showing 4 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/python-app.yml
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Expand Up @@ -46,4 +46,4 @@ jobs:
wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML
- name: Test percolator ms2rescore
run: |
quantmsutilsc ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
rescoring ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
2 changes: 1 addition & 1 deletion .github/workflows/python-package.yml
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Expand Up @@ -43,4 +43,4 @@ jobs:
pytest
- name: Test commandline tool
run: |
quantmsutilsc --help
rescoring --help
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -48,7 +48,7 @@ Quantms = "https://quantms.org"
LICENSE = "https://github.com/bigbio/quantms-rescoring/blob/main/LICENSE"

[tool.poetry.scripts]
quantmsutilsc = "quantmsrescore.rescoring:main"
rescoring = "quantmsrescore.rescoring:main"

[tool.isort]
profile = "black"
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2 changes: 1 addition & 1 deletion recipe/meta.yaml
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Expand Up @@ -10,7 +10,7 @@ build:
entry_points:
- rescoring=quantmsrescore.rescoring:main
run_exports:
- {{ pin_subpackage('quantms-utils', max_pin="x.x") }}
- {{ pin_subpackage('quantms-rescoring', max_pin="x.x") }}
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
number: 0
noarch: python
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