From 644cbfaed110c8942c4c3177815961221ff438a5 Mon Sep 17 00:00:00 2001
From: Yasset Perez-Riverol <ypriverol@gmail.com>
Date: Wed, 18 Dec 2024 20:16:13 +0000
Subject: [PATCH] Update python-app.yml

---
 .github/workflows/python-app.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
index 851a0a4..9df26b1 100644
--- a/.github/workflows/python-app.yml
+++ b/.github/workflows/python-app.yml
@@ -47,3 +47,8 @@ jobs:
     - name: Test percolator ms2rescore
       run: |
         rescoring ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v5
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        slug: bigbio/quantms-rescoring