Update python-app.yml

bigbio · Dec 18, 2024 · 644cbfa · 644cbfa
1 parent 6becbef
commit 644cbfa
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -47,3 +47,8 @@ jobs:
     - name: Test percolator ms2rescore
       run: |
         rescoring ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v5
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        slug: bigbio/quantms-rescoring