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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 123 35

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 115 11

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 103 26

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 77 30

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 54 6

Repositories

Showing 10 of 76 repositories
  • pywarper Public

    Conformal mapping-based warping of neuronal arbor morphologies.

    Jupyter Notebook 0 0 0 0 Updated Apr 23, 2025
  • Python 0 0 0 0 Updated Apr 11, 2025
  • pygridfit Public

    Python port of gridfit (John D'Errico, 2006)

    Jupyter Notebook 0 0 0 0 Updated Apr 11, 2025
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    Python 0 AGPL-3.0 1 24 4 Updated Apr 10, 2025
  • hh_sbi Public
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Apr 9, 2025
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    Jupyter Notebook 9 MIT 1 0 0 Updated Apr 4, 2025
  • t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 12 1 1 Updated Mar 23, 2025
  • iclr-dataset Public

    ICLR dataset

    Jupyter Notebook 24 5 1 0 Updated Mar 21, 2025
  • ephyspy Public

    A Python package for electrophysiological feature extraction for patch-clamp experiments.

    Jupyter Notebook 3 GPL-3.0 1 7 0 Updated Mar 19, 2025
  • AIMS2025-NeuroSimInf Public

    Course repository for Simulation and Inference for Neuroscience

    Jupyter Notebook 0 5 1 0 Updated Mar 19, 2025

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