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139 Open 1,916 Closed
139 Open 1,916 Closed
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Issues list

PacBio Data/Metadata accessibility
#2110 opened Apr 15, 2025 by MeyB24000
1
Rarefaction in 2025
#2109 opened Apr 11, 2025 by isabelle-laforest
ITS primer issues
#2108 opened Apr 10, 2025 by mentorwan
3
DADA2 for long read/full length 16S microbiome (Pacbio)
#2107 opened Apr 7, 2025 by ebrahimie
2
When performing the "denoise-ccs" operation using DADA2, how can I accelerate the processing speed for high-depth CCS samples?
#2106 opened Apr 7, 2025 by bio-Tao
3
Messing with priors
#2105 opened Apr 4, 2025 by lcooley05
3
Custom trainsets for SILVA v138.2 SSU and LSU for fungi
#2104 opened Apr 4, 2025 by ep142
1
Allowing more errors in full-length (HiFi) reads
#2103 opened Apr 2, 2025 by jonalim
4
How to handle mixed-orientation sequencing reads on a large-scale
#2102 opened Apr 2, 2025 by chrisAta
1
orient.fwd
#2101 opened Mar 27, 2025 by krmaas
2
Sequences modified after merging
#2100 opened Mar 26, 2025 by snpresa
1
Entire groups of microbes disappeared from dataset
#2098 opened Mar 19, 2025 by PaulHR1993
7
TrunLen - differences between setting it at zero versus full read length
#2097 opened Mar 18, 2025 by andrebolerbarros
3
Lengths ASVs V3-V4 region
#2096 opened Mar 18, 2025 by andrebolerbarros
QualityProfile, error rate and TruncLen optimization
#2095 opened Mar 12, 2025 by luigallucci
3
Error: package or namespace load failed for ‘dada2’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '...../dada2.so'
#2094 opened Mar 12, 2025 by PPpissar
1
dada2 on single-end ITS amplicons - singletons possible
#2093 opened Mar 12, 2025 by ARW-UBT
1
Dealing with NovaSeq - Several Approaches
#2092 opened Mar 6, 2025 by andrebolerbarros
6
Comparing taxonomic assignement across merging methods
#2091 opened Mar 5, 2025 by alexis-roy5
1
Advice on memory usage?
#2090 opened Mar 4, 2025 by bl24
3
Failing to re-alligning sequences with same truncLen parameters
#2089 opened Mar 4, 2025 by Debora6991
1
NEED HELP on how to proceed with Pacbio Kinnex dataset
#2088 opened Feb 27, 2025 by magicprotoss
4
The number of primer hits much more less than the total reads.
#2087 opened Feb 26, 2025 by MizanurRahman24
4
Inconsistent ASV inference when running samples together vs. individually with default (pool=FALSE, selfConsist=FALSE) settings.
#2085 opened Feb 20, 2025 by saharbagheri
8
REANALYSING DATASET IN DADA2- Taxa assign
#2084 opened Feb 18, 2025 by Ka-di1
5
ProTip! What’s not been updated in a month: updated:<2025-03-16.