SUMMARY.md

Table of contents

Information about hctsa

• Introduction
• Getting started
• Publications using hctsa
• UMAP Projections
• Related Time-Series Resources
• List of included code files
• FAQ

Installing and using hctsa

• General advice and common pitfalls
• Installing and setting up
  • Structure of the hctsa framework
  • Overview of an hctsa analysis
  • Compiling binaries
• Running hctsa computations
  • Input files
  • Performing calculations
  • Inspecting errors
  • Working with hctsa files
• Analyzing and visualizing results
  • Assigning group labels to data
  • Filtering and normalizing
  • Clustering rows and columns
  • Visualizing the data matrix
  • Plotting the time series
  • Low dimensional representation
  • Finding nearest neighbors
  • Investigating specific operations
  • Exploring classification accuracy
  • Finding informative features
  • Interpreting features
  • Comparing to existing features
  • Working with short time series
• Working with a mySQL database
  • Setting up the mySQL database
  • The database structure
  • Populating the database with time series and operations
  • Adding time series
  • Retrieving from the database
  • Computing operations and writing back to the database
  • Cycling through computations using runscripts
  • Clearing or removing data
  • Retrieving data from the database
  • Error handling and maintenance