Phd Projects

Following pages include documentation of the analyses I performed for my PhD projects

1. Red oak (Paper)

• Comparative genomics analyses
• Red oak genome and annotation submission journey
• Red oak parental genome versioning

2. Red oak three generation structural variation

• Red oak SV

3. Citrus

• PHG pangenome
• wilking manual annotation

4. Muscadine

• Variant calling using GBS reads

5. Chestnut

• Identifying candidate genes for blight resistance
• Differential gene expression

6. White oak

• White oak genome analyses
• White oak genome version 3
• White oak genome version 3 annotation
• White oak genome versioning
• White oak haplotypes and annotation submission NCBI